Wall clock time and date at job start Sun Mar 29 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28715 * 125.32016 * 2 1 4 4 N 1.28984 * 109.00455 * 180.02562 * 3 2 1 5 5 C 1.34219 * 107.24297 * 359.97438 * 4 3 2 6 6 C 1.47896 * 126.69908 * 180.02562 * 5 4 3 7 7 O 1.21458 * 119.99592 * 180.02562 * 6 5 4 8 8 O 1.34692 * 119.99981 * 359.74461 * 6 5 4 9 9 C 1.45201 * 116.99892 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47298 * 29.99966 * 9 8 6 11 11 C 1.50697 * 109.47259 * 150.00409 * 9 8 6 12 12 H 1.07998 * 119.99846 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99915 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00247 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99842 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46903 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46980 * 119.99729 * 15 13 11 18 18 H 1.48492 * 109.47196 * 239.99820 * 15 13 11 19 19 C 1.53007 * 109.47088 * 270.00522 * 9 8 6 20 20 C 1.52995 * 117.50221 * 128.74705 * 19 9 8 21 21 C 1.52990 * 117.50022 * 60.08491 * 19 9 8 22 22 N 1.28878 * 125.31721 * 180.31772 * 2 1 3 23 23 H 1.08995 * 109.47140 * 89.97383 * 1 2 3 24 24 H 1.08995 * 109.47243 * 209.97740 * 1 2 3 25 25 H 1.08997 * 109.46941 * 329.97573 * 1 2 3 26 26 H 0.97003 * 120.00102 * 179.97438 * 14 13 11 27 27 H 1.08997 * 115.54465 * 274.41370 * 19 9 8 28 28 H 1.09007 * 117.49403 * 359.97438 * 20 19 9 29 29 H 1.08997 * 117.50330 * 145.01361 * 20 19 9 30 30 H 1.09000 * 117.49794 * 214.98240 * 21 19 9 31 31 H 1.09005 * 117.50390 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4470 0.6879 -0.0005 5 6 3.4688 -0.6541 -0.0003 6 6 4.6687 -1.5187 -0.0002 7 8 4.5465 -2.7271 -0.0005 8 8 5.8970 -0.9659 -0.0056 9 6 7.0290 -1.8752 -0.0057 10 1 6.7535 -2.7984 -0.5157 11 6 8.1892 -1.2329 -0.7215 12 1 8.0860 -0.2407 -1.1353 13 6 9.3822 -1.9124 -0.8490 14 7 9.5078 -3.1208 -0.3455 15 14 10.8201 -1.1164 -1.7368 16 1 10.4244 0.2353 -2.2073 17 1 11.9725 -0.9999 -0.8075 18 1 11.2064 -1.9521 -2.9019 19 6 7.4307 -2.1899 1.4368 20 6 7.5769 -3.6627 1.8242 21 6 6.3827 -2.8518 2.3335 22 7 2.2100 -1.0516 -0.0058 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 10.3469 -3.5990 -0.4355 27 1 8.1125 -1.4773 1.9009 28 1 7.3865 -4.4076 1.0515 29 1 8.3546 -3.9192 2.5435 30 1 6.3752 -2.5751 3.3878 31 1 5.4068 -3.0629 1.8961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707008.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:43 Heat of formation + Delta-G solvation = 80.509557 kcal Electronic energy + Delta-G solvation = -18343.570600 eV Core-core repulsion = 15244.240920 eV Total energy + Delta-G solvation = -3099.329680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.40456 -39.65249 -36.50840 -35.30828 -34.97829 -33.18336 -32.65491 -29.23393 -27.89858 -25.42570 -23.38976 -22.89622 -21.31351 -21.12797 -19.37068 -18.25979 -17.66277 -16.99848 -16.43981 -15.97964 -15.31925 -14.61937 -14.14506 -13.94248 -13.76659 -13.63470 -12.96483 -12.66038 -12.17896 -11.64504 -11.45451 -11.14203 -11.11978 -11.03952 -10.94426 -10.53222 -10.35884 -10.28273 -10.09840 -9.83476 -9.46081 -9.05654 -8.67966 -8.44557 -6.15514 -4.23212 0.94395 1.52097 1.65497 2.92261 3.26341 3.27662 3.34280 3.40895 4.04791 4.28249 4.46326 4.55197 4.84485 4.89722 5.08382 5.17894 5.43555 5.69962 5.89810 5.94191 6.13842 6.35588 6.50805 6.58800 6.98061 7.12149 7.14310 7.32811 7.57016 7.80664 8.01495 8.13332 8.46615 8.85900 9.41119 10.91389 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.005788 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.998930 B = 4836.201804 C = 5436.303555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.139 5.139 3 N -0.063 5.063 4 N -0.225 5.225 5 C 0.159 3.841 6 C 0.558 3.442 7 O -0.483 6.483 8 O -0.322 6.322 9 C 0.249 3.751 10 H 0.053 0.947 11 C -0.527 4.527 12 H 0.073 0.927 13 C 0.070 3.930 14 N -0.873 5.873 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.230 4.230 22 N -0.248 5.248 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.264 0.736 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 4.044 2.011 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.052 5.052 3 N -0.058 5.058 4 N -0.100 5.100 5 C -0.123 4.123 6 C 0.395 3.605 7 O -0.368 6.368 8 O -0.236 6.236 9 C 0.197 3.803 10 H 0.071 0.929 11 C -0.565 4.565 12 H 0.091 0.909 13 C -0.134 4.134 14 N -0.509 5.509 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.137 4.137 20 C -0.158 4.158 21 C -0.267 4.267 22 N -0.104 5.104 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.134 0.866 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.380 4.018 2.027 16.025 hybrid contribution 0.980 -0.212 -0.331 1.056 sum -14.400 3.805 1.695 14.990 Atomic orbital electron populations 1.22508 0.68660 1.07097 1.06307 1.50251 1.11004 1.00783 1.43196 1.78983 0.96627 1.14090 1.16063 1.76351 1.08942 1.10160 1.14525 1.24305 0.91646 0.89973 1.06354 1.18589 0.83007 0.84422 0.74443 1.90833 1.86976 1.14016 1.44973 1.86647 1.13009 1.43314 1.80612 1.20473 0.78824 0.89054 0.91969 0.92921 1.20936 0.95192 1.03597 1.36728 0.90865 1.24867 0.98341 0.94884 0.95333 1.70054 1.26090 1.11179 1.43558 0.86268 0.81461 0.79549 0.79173 1.19403 1.20777 1.20827 1.22632 0.99372 0.96036 0.95615 1.22381 0.96998 0.94934 1.01476 1.23278 0.95788 1.09012 0.98662 1.75085 1.02269 1.14260 1.18768 0.87740 0.86858 0.86641 0.92609 0.88933 0.89184 0.90587 0.90826 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.62 59.85 0.70 1.16 16 2 N -0.14 -1.74 4.39 -16.65 -0.07 -1.81 16 3 N -0.06 -0.95 13.23 60.35 0.80 -0.15 16 4 N -0.22 -4.19 12.55 32.08 0.40 -3.78 16 5 C 0.16 3.07 8.18 -156.24 -1.28 1.80 16 6 C 0.56 12.48 7.19 34.68 0.25 12.73 16 7 O -0.48 -11.42 14.20 -19.23 -0.27 -11.70 16 8 O -0.32 -7.93 9.85 -40.47 -0.40 -8.33 16 9 C 0.25 6.57 2.25 -27.88 -0.06 6.50 16 10 H 0.05 1.51 6.91 -51.93 -0.36 1.15 16 11 C -0.53 -14.62 8.88 -34.44 -0.31 -14.92 16 12 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 13 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 14 N -0.87 -23.93 11.43 55.43 0.63 -23.30 16 15 Si 0.91 20.93 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C -0.12 -2.89 4.47 -90.62 -0.41 -3.29 16 20 C -0.12 -2.76 9.04 -26.70 -0.24 -3.00 16 21 C -0.23 -5.01 9.80 -26.70 -0.26 -5.27 16 22 N -0.25 -4.04 12.17 32.10 0.39 -3.65 16 23 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.09 2.33 8.11 -51.93 -0.42 1.91 16 28 H 0.09 2.18 8.05 -51.93 -0.42 1.76 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.09 2.05 5.38 -51.93 -0.28 1.77 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -32.11 280.71 -4.15 -36.26 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.14 Total: -1.16 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.71 Total: -2.50 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 2.15 Total: -32.70 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.67 Total: -20.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.11 -4.15 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707008.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.769 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds