Wall clock time and date at job start Sun Mar 29 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28715 * 125.32016 * 2 1 4 4 N 1.28984 * 109.00455 * 180.02562 * 3 2 1 5 5 C 1.34219 * 107.24297 * 359.97438 * 4 3 2 6 6 C 1.47896 * 126.69908 * 180.02562 * 5 4 3 7 7 O 1.21458 * 119.99592 * 180.02562 * 6 5 4 8 8 O 1.34692 * 119.99981 * 359.74461 * 6 5 4 9 9 C 1.45201 * 116.99892 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47298 * 29.99966 * 9 8 6 11 11 C 1.50697 * 109.47259 * 150.00409 * 9 8 6 12 12 H 1.07998 * 119.99846 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99915 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00247 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99842 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46903 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46980 * 119.99729 * 15 13 11 18 18 H 1.48492 * 109.47196 * 239.99820 * 15 13 11 19 19 C 1.53007 * 109.47088 * 270.00522 * 9 8 6 20 20 C 1.52995 * 117.50221 * 128.74705 * 19 9 8 21 21 C 1.52990 * 117.50022 * 60.08491 * 19 9 8 22 22 N 1.28878 * 125.31721 * 180.31772 * 2 1 3 23 23 H 1.08995 * 109.47140 * 89.97383 * 1 2 3 24 24 H 1.08995 * 109.47243 * 209.97740 * 1 2 3 25 25 H 1.08997 * 109.46941 * 329.97573 * 1 2 3 26 26 H 0.97003 * 120.00102 * 179.97438 * 14 13 11 27 27 H 1.08997 * 115.54465 * 274.41370 * 19 9 8 28 28 H 1.09007 * 117.49403 * 359.97438 * 20 19 9 29 29 H 1.08997 * 117.50330 * 145.01361 * 20 19 9 30 30 H 1.09000 * 117.49794 * 214.98240 * 21 19 9 31 31 H 1.09005 * 117.50390 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4470 0.6879 -0.0005 5 6 3.4688 -0.6541 -0.0003 6 6 4.6687 -1.5187 -0.0002 7 8 4.5465 -2.7271 -0.0005 8 8 5.8970 -0.9659 -0.0056 9 6 7.0290 -1.8752 -0.0057 10 1 6.7535 -2.7984 -0.5157 11 6 8.1892 -1.2329 -0.7215 12 1 8.0860 -0.2407 -1.1353 13 6 9.3822 -1.9124 -0.8490 14 7 9.5078 -3.1208 -0.3455 15 14 10.8201 -1.1164 -1.7368 16 1 10.4244 0.2353 -2.2073 17 1 11.9725 -0.9999 -0.8075 18 1 11.2064 -1.9521 -2.9019 19 6 7.4307 -2.1899 1.4368 20 6 7.5769 -3.6627 1.8242 21 6 6.3827 -2.8518 2.3335 22 7 2.2100 -1.0516 -0.0058 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 10.3469 -3.5990 -0.4355 27 1 8.1125 -1.4773 1.9009 28 1 7.3865 -4.4076 1.0515 29 1 8.3546 -3.9192 2.5435 30 1 6.3752 -2.5751 3.3878 31 1 5.4068 -3.0629 1.8961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707008.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:43 Heat of formation + Delta-G solvation = 58.888913 kcal Electronic energy + Delta-G solvation = -18344.508142 eV Core-core repulsion = 15244.240920 eV Total energy + Delta-G solvation = -3100.267222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.64789 -41.48484 -38.36826 -36.91476 -36.33977 -34.71653 -34.46475 -30.45566 -29.54060 -26.94831 -25.20714 -24.13130 -23.09139 -22.76742 -21.28323 -19.81426 -18.85539 -18.63421 -18.14237 -17.64115 -17.13176 -16.54964 -15.77696 -15.37167 -14.95265 -14.68693 -14.28411 -14.17406 -13.61887 -13.37926 -13.19576 -12.99451 -12.80479 -12.42277 -12.34942 -12.27785 -12.20847 -11.94769 -11.79180 -11.54891 -11.39479 -10.97069 -10.63514 -10.45803 -8.21597 -6.38221 -0.36609 0.12558 0.63104 1.43585 1.44923 1.50543 1.60755 1.62066 2.40230 2.79403 3.03603 3.06971 3.35033 3.84322 4.01234 4.10364 4.25429 4.28715 4.41190 4.48484 4.57959 4.63328 4.79571 4.92278 5.11216 5.20720 5.28887 5.43668 5.51905 5.74754 6.00125 6.49271 6.74295 6.94324 7.30191 8.85152 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.005788 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.998930 B = 4836.201804 C = 5436.303555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.108 5.108 3 N -0.057 5.057 4 N -0.254 5.254 5 C 0.135 3.865 6 C 0.559 3.441 7 O -0.503 6.503 8 O -0.335 6.335 9 C 0.253 3.747 10 H 0.020 0.980 11 C -0.557 4.557 12 H 0.063 0.937 13 C 0.031 3.969 14 N -0.892 5.892 15 Si 0.975 3.025 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.276 1.276 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.204 4.204 22 N -0.246 5.246 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.148 0.852 26 H 0.269 0.731 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.520 4.744 2.404 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.024 5.024 3 N -0.051 5.051 4 N -0.128 5.128 5 C -0.146 4.146 6 C 0.398 3.602 7 O -0.389 6.389 8 O -0.249 6.249 9 C 0.201 3.799 10 H 0.037 0.963 11 C -0.594 4.594 12 H 0.081 0.919 13 C -0.172 4.172 14 N -0.527 5.527 15 Si 0.799 3.201 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.240 4.240 22 N -0.104 5.104 23 H 0.152 0.848 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.721 4.733 2.425 17.546 hybrid contribution 1.119 -0.419 -0.470 1.284 sum -15.602 4.314 1.956 16.305 Atomic orbital electron populations 1.23391 0.64259 1.09864 1.09052 1.50941 1.12865 0.99256 1.39317 1.78893 0.95769 1.14374 1.16016 1.76310 1.10891 1.09909 1.15737 1.23657 0.91432 0.90041 1.09423 1.18890 0.83110 0.84710 0.73466 1.90803 1.87256 1.14969 1.45911 1.86621 1.13836 1.43209 1.81189 1.20179 0.79117 0.87809 0.92789 0.96260 1.21151 0.96503 1.03602 1.38182 0.91857 1.25652 1.00484 0.95345 0.95713 1.70144 1.26858 1.11976 1.43734 0.85257 0.78131 0.78559 0.78169 1.19340 1.19761 1.20120 1.22456 1.01144 0.96856 0.95203 1.22322 0.98215 0.93444 1.01291 1.23270 0.94560 1.06589 0.99620 1.75048 1.01357 1.15444 1.18567 0.84832 0.84656 0.83417 0.92186 0.89783 0.91140 0.88874 0.87752 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.62 127.77 1.49 1.90 16 2 N -0.11 -2.43 4.39 -206.60 -0.91 -3.33 16 3 N -0.06 -1.62 13.23 37.02 0.49 -1.13 16 4 N -0.25 -9.42 12.55 -52.41 -0.66 -10.08 16 5 C 0.14 5.24 8.18 137.10 1.12 6.37 16 6 C 0.56 25.81 7.19 70.38 0.51 26.31 16 7 O -0.50 -24.60 14.20 19.97 0.28 -24.32 16 8 O -0.33 -17.16 9.85 -56.01 -0.55 -17.71 16 9 C 0.25 13.92 2.25 29.85 0.07 13.99 16 10 H 0.02 1.18 6.91 -2.38 -0.02 1.17 16 11 C -0.56 -31.89 8.88 25.60 0.23 -31.66 16 12 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 13 C 0.03 1.67 5.30 84.66 0.45 2.12 16 14 N -0.89 -49.43 11.43 21.45 0.25 -49.18 16 15 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 19 C -0.14 -6.89 4.47 -10.80 -0.05 -6.94 16 20 C -0.12 -5.32 9.04 30.62 0.28 -5.04 16 21 C -0.20 -8.76 9.80 30.61 0.30 -8.46 16 22 N -0.25 -7.73 12.17 -52.36 -0.64 -8.36 16 23 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.08 4.31 8.11 -2.39 -0.02 4.29 16 28 H 0.07 3.51 8.05 -2.38 -0.02 3.49 16 29 H 0.09 3.91 8.14 -2.39 -0.02 3.90 16 30 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.08 3.74 5.38 -2.38 -0.01 3.72 16 Total: -1.00 -71.58 280.71 5.84 -65.74 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.16 Total: 4.66 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.38 Total: -1.41 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.47 Total: -72.08 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.27 Total: -42.02 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -71.58 5.84 -65.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707008.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.633 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds