Wall clock time and date at job start Sun Mar 29 2020 22:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48502 * 109.46807 * 264.85682 * 3 2 1 5 5 H 1.48496 * 109.47090 * 24.85352 * 3 2 1 6 6 H 1.48493 * 109.47103 * 144.85656 * 3 2 1 7 7 C 1.37877 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00407 * 4.82964 * 7 2 1 9 9 C 1.50700 * 119.99993 * 184.84103 * 7 2 1 10 10 H 1.08996 * 109.47524 * 54.72465 * 9 7 2 11 11 O 1.45204 * 109.46849 * 294.72725 * 9 7 2 12 12 C 1.34227 * 117.00108 * 150.00150 * 11 9 7 13 13 O 1.20828 * 119.99744 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00452 * 180.02562 * 12 11 9 15 15 N 1.46496 * 109.47371 * 179.97438 * 14 12 11 16 16 N 1.28883 * 125.45111 * 90.00277 * 15 14 12 17 17 C 1.31033 * 107.91530 * 180.02562 * 16 15 14 18 18 N 1.33308 * 106.90435 * 359.97438 * 17 16 15 19 19 N 1.28783 * 125.44712 * 270.02114 * 15 14 12 20 20 C 1.53001 * 109.47382 * 174.73311 * 9 7 2 21 21 C 1.53003 * 117.49683 * 254.04618 * 20 9 7 22 22 C 1.52999 * 117.50100 * 185.38889 * 20 9 7 23 23 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46874 * 59.99606 * 14 12 11 25 25 H 1.09001 * 109.46579 * 300.00185 * 14 12 11 26 26 H 1.08005 * 126.54576 * 179.97438 * 17 16 15 27 27 H 1.08999 * 115.55205 * 39.71163 * 20 9 7 28 28 H 1.08993 * 117.49856 * 359.97438 * 21 20 9 29 29 H 1.08994 * 117.49688 * 145.01539 * 21 20 9 30 30 H 1.09007 * 117.49781 * 214.98094 * 22 20 9 31 31 H 1.09006 * 117.49874 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6054 1.9835 -1.3945 5 1 1.3966 2.6816 0.5884 6 1 3.4881 1.4739 0.8059 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1278 -0.0797 9 6 3.5075 -1.1965 0.1096 10 1 3.8077 -0.6400 0.9974 11 8 4.0801 -0.5721 -1.0696 12 6 5.2526 0.0626 -0.9145 13 8 5.7826 0.0959 0.1708 14 6 5.9074 0.7349 -2.0937 15 7 7.1659 1.3518 -1.6673 16 7 8.3195 0.7772 -1.6728 17 6 9.2005 1.6376 -1.2248 18 7 8.5385 2.7606 -0.9461 19 7 7.2963 2.5548 -1.2268 20 6 4.0086 -2.6381 0.2176 21 6 4.4963 -3.1157 1.5869 22 6 5.5035 -2.8496 0.4654 23 1 -0.4849 0.8400 0.0004 24 1 5.2426 1.5026 -2.4895 25 1 6.1091 -0.0054 -2.8679 26 1 10.2604 1.4690 -1.1043 27 1 3.4958 -3.3627 -0.4149 28 1 4.4605 -2.4029 2.4106 29 1 4.3046 -4.1546 1.8550 30 1 5.9742 -3.7137 -0.0039 31 1 6.1301 -1.9618 0.5511 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347937416.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:47 Heat of formation + Delta-G solvation = 80.424890 kcal Electronic energy + Delta-G solvation = -18760.862528 eV Core-core repulsion = 15661.529176 eV Total energy + Delta-G solvation = -3099.333352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.31642 -40.05964 -37.02156 -35.42831 -34.86249 -33.06911 -32.90535 -29.85099 -28.42078 -23.96544 -23.82409 -23.09766 -21.85618 -21.07005 -19.57173 -18.05487 -17.87106 -17.16944 -16.61446 -16.27226 -15.59692 -15.22333 -14.69631 -14.06875 -13.91526 -13.67610 -12.85486 -12.69951 -12.31471 -11.97983 -11.73969 -11.39798 -11.12683 -11.02896 -10.97759 -10.94629 -10.64397 -10.38536 -10.03233 -9.89196 -9.62037 -9.55902 -9.19399 -8.96184 -6.48666 -4.56437 1.15958 1.73945 2.25904 2.47301 3.06518 3.14979 3.25562 3.29240 4.06833 4.13931 4.35923 4.39260 4.77458 4.81327 4.93509 5.28600 5.38688 5.53996 5.65894 5.68980 5.76356 6.01975 6.08855 6.09727 6.37696 6.45982 6.64147 6.78645 7.20330 7.35179 8.07976 8.27465 8.36118 8.57248 9.10355 10.59777 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.008401 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.344255 B = 3332.189305 C = 4248.280183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.092 0.908 9 C 0.206 3.794 10 H 0.054 0.946 11 O -0.345 6.345 12 C 0.438 3.562 13 O -0.504 6.504 14 C 0.123 3.877 15 N -0.125 5.125 16 N -0.300 5.300 17 C 0.141 3.859 18 N -0.288 5.288 19 N -0.049 5.049 20 C -0.141 4.141 21 C -0.168 4.168 22 C -0.200 4.200 23 H 0.274 0.726 24 H 0.152 0.848 25 H 0.155 0.845 26 H 0.235 0.765 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.544 -0.075 -4.684 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.120 4.120 3 Si 0.700 3.300 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.539 4.539 8 H 0.110 0.890 9 C 0.156 3.844 10 H 0.072 0.928 11 O -0.261 6.261 12 C 0.278 3.722 13 O -0.394 6.394 14 C 0.001 3.999 15 N -0.037 5.037 16 N -0.150 5.150 17 C -0.162 4.162 18 N -0.159 5.159 19 N -0.043 5.043 20 C -0.159 4.159 21 C -0.205 4.205 22 C -0.237 4.237 23 H 0.084 0.916 24 H 0.170 0.830 25 H 0.173 0.827 26 H 0.252 0.748 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.867 0.291 -4.323 12.634 hybrid contribution 0.850 0.472 0.053 0.974 sum 12.718 0.763 -4.270 13.437 Atomic orbital electron populations 1.69877 1.06446 1.28260 1.45412 1.25119 0.94841 0.99748 0.92299 0.86909 0.80819 0.82716 0.79527 1.19243 1.21074 1.18440 1.21028 0.86380 0.95518 1.51003 0.88983 1.20984 0.92957 0.87249 0.83258 0.92830 1.87069 1.30673 1.61664 1.46712 1.23071 0.82414 0.77935 0.88795 1.90640 1.63836 1.57753 1.27134 1.21845 0.79719 1.01230 0.97095 1.49625 1.07503 1.07497 1.39073 1.74692 0.91777 1.26598 1.21918 1.27318 1.02302 0.86462 1.00116 1.75863 0.97008 1.24158 1.18888 1.79035 1.13686 1.00607 1.10958 1.22622 0.94891 0.98997 0.99393 1.22806 1.03872 1.01348 0.92513 1.23163 0.93231 1.03292 1.04018 0.91631 0.83033 0.82717 0.74842 0.87763 0.89048 0.89268 0.89823 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 13.96 55.43 0.77 -23.72 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.00 25.56 -169.99 -4.34 16.66 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.45 6.42 56.52 0.36 -6.09 16 7 C -0.50 -13.34 9.35 -34.44 -0.32 -13.66 16 8 H 0.09 2.58 7.99 -52.48 -0.42 2.16 16 9 C 0.21 4.78 1.54 -27.88 -0.04 4.74 16 10 H 0.05 1.35 5.90 -51.93 -0.31 1.04 16 11 O -0.35 -7.38 8.18 -39.25 -0.32 -7.70 16 12 C 0.44 8.44 6.39 36.01 0.23 8.67 16 13 O -0.50 -11.10 13.38 -18.75 -0.25 -11.35 16 14 C 0.12 1.74 7.20 -5.19 -0.04 1.70 16 15 N -0.12 -1.97 3.49 -11.72 -0.04 -2.01 16 16 N -0.30 -4.42 12.13 29.34 0.36 -4.07 16 17 C 0.14 1.81 13.26 -91.60 -1.21 0.60 16 18 N -0.29 -4.55 12.50 29.33 0.37 -4.18 16 19 N -0.05 -0.84 13.25 60.35 0.80 -0.04 16 20 C -0.14 -2.82 5.29 -90.62 -0.48 -3.30 16 21 C -0.17 -3.00 10.18 -26.69 -0.27 -3.27 16 22 C -0.20 -3.56 9.82 -26.70 -0.26 -3.83 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.15 1.80 8.14 -51.93 -0.42 1.37 16 25 H 0.16 1.57 8.14 -51.93 -0.42 1.14 16 26 H 0.24 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 28 H 0.09 1.69 8.08 -51.93 -0.42 1.27 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.10 1.97 5.58 -51.93 -0.29 1.68 16 LS Contribution 276.21 15.07 4.16 4.16 Total: -1.00 -31.91 276.21 -4.14 -36.06 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.15 Total: 2.22 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.05 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 2.26 Total: -34.01 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.57 Total: -19.05 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.34 Total: 16.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.91 -4.14 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347937416.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.481 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds