Wall clock time and date at job start Sun Mar 29 2020 23:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38264 * 119.98755 * 269.72515 * 16 15 14 18 18 C 1.38219 * 120.05395 * 179.72672 * 17 16 15 19 19 C 1.38226 * 120.02212 * 0.54862 * 18 17 16 20 20 C 1.38435 * 119.97195 * 359.72418 * 19 18 17 21 21 F 1.35103 * 120.02305 * 180.02562 * 20 19 18 22 22 C 1.38176 * 119.98587 * 89.99473 * 16 15 14 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.08003 * 119.97167 * 359.97438 * 17 16 15 30 30 H 1.08003 * 119.99117 * 180.27173 * 18 17 16 31 31 H 1.07997 * 120.00935 * 179.74881 * 19 18 17 32 32 H 1.07998 * 120.01220 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 6 2.5312 0.6606 5.4509 18 6 2.1041 1.2683 6.6166 19 6 0.9143 0.8798 7.2031 20 6 0.1476 -0.1142 6.6195 21 9 -1.0158 -0.4943 7.1916 22 6 0.5737 -0.7182 5.4485 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 3.4634 0.9614 4.9959 30 1 2.7024 2.0437 7.0717 31 1 0.5827 1.3519 8.1161 32 1 -0.0238 -1.4934 4.9920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350087777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:37 Heat of formation + Delta-G solvation = -117.251917 kcal Electronic energy + Delta-G solvation = -17601.569586 eV Core-core repulsion = 14441.451612 eV Total energy + Delta-G solvation = -3160.117974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.00447 -39.84652 -38.93669 -35.79183 -33.90247 -32.21490 -30.72211 -30.52076 -26.68295 -25.21504 -23.13651 -22.85879 -21.59325 -19.83102 -17.56603 -16.77895 -16.57146 -16.33720 -16.04976 -15.70576 -15.58646 -15.28955 -14.41501 -14.03566 -13.52368 -13.29802 -12.89921 -12.69740 -12.35308 -12.11533 -11.76418 -11.54635 -11.16239 -11.05303 -10.80058 -10.72280 -10.35301 -10.11884 -10.07319 -9.38843 -9.06172 -9.04254 -8.81918 -8.45997 -6.11803 -4.17477 0.90880 1.03712 3.17582 3.26303 3.29954 3.35464 3.42110 3.80389 4.09443 4.40414 4.53984 4.61837 4.87482 5.02598 5.14867 5.21507 5.35704 5.49195 5.65242 5.88435 5.93134 6.10319 6.11331 6.34312 6.65287 6.70879 6.85711 6.86780 7.16631 7.41972 7.72904 7.93007 8.12415 8.80655 8.91756 9.48183 10.95549 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043173 B = 0.004174 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.403087 B = 6707.300316 C = 6875.845137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.360 6.360 15 C 0.100 3.900 16 C -0.056 4.056 17 C -0.107 4.107 18 C -0.094 4.094 19 C -0.151 4.151 20 C 0.094 3.906 21 F -0.141 7.141 22 C -0.131 4.131 23 H 0.031 0.969 24 H 0.023 0.977 25 H 0.096 0.904 26 H 0.263 0.737 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 1.128 17.121 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.278 6.278 15 C 0.025 3.975 16 C -0.056 4.056 17 C -0.125 4.125 18 C -0.112 4.112 19 C -0.170 4.170 20 C 0.075 3.925 21 F -0.119 7.119 22 C -0.150 4.150 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.352 0.908 16.992 17.020 hybrid contribution 0.130 -0.587 -0.623 0.866 sum 0.482 0.321 16.369 16.379 Atomic orbital electron populations 1.21735 0.95570 1.00062 1.01782 1.18777 0.94896 0.96992 0.85417 0.91769 1.21134 1.31954 1.13286 0.88757 0.90623 1.24941 0.94869 0.95031 0.99141 1.69882 1.36422 1.22840 1.23881 0.86372 0.78498 0.80163 0.81726 1.20517 1.19672 1.21121 1.25422 0.76533 0.83244 0.83804 1.90501 1.36404 1.26737 1.86680 1.86707 1.70397 1.55693 1.15035 1.21623 0.99071 0.94980 0.81783 1.19484 0.94221 0.96750 0.95133 1.21206 1.00489 0.95238 0.95612 1.21003 0.95464 0.99359 0.95372 1.21176 0.95992 0.98093 1.01689 1.17647 0.83548 0.97467 0.93868 1.91502 1.45912 1.90411 1.84090 1.21104 0.97080 1.01839 0.94967 0.94979 0.95753 0.88535 0.92673 0.90642 0.90444 0.84917 0.84737 0.84739 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.47 2.74 -92.93 -0.25 1.22 16 3 H 0.06 1.67 8.14 -51.92 -0.42 1.25 16 4 C -0.51 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.47 10.81 7.25 36.00 0.26 11.07 16 13 O -0.52 -12.95 15.21 -18.75 -0.29 -13.24 16 14 O -0.36 -7.08 10.11 -39.25 -0.40 -7.48 16 15 C 0.10 1.55 5.59 36.01 0.20 1.75 16 16 C -0.06 -0.73 5.52 -104.63 -0.58 -1.31 16 17 C -0.11 -1.20 9.70 -39.58 -0.38 -1.59 16 18 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 19 C -0.15 -1.51 10.03 -39.51 -0.40 -1.91 16 20 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 21 F -0.14 -1.75 17.27 2.25 0.04 -1.72 16 22 C -0.13 -1.67 9.68 -39.52 -0.38 -2.05 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.51 8.11 -51.93 -0.42 0.08 16 25 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -29.91 289.11 -6.55 -36.47 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -3.60 Total: -1.50 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.27 Total: -9.13 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.63 Total: -24.09 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.68 Total: -20.72 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.91 -6.55 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350087777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.786 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds