Wall clock time and date at job start Sun Mar 29 2020 22:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47079 * 300.00005 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00111 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34776 * 125.64926 * 155.82503 * 13 12 11 15 15 O 1.21554 * 119.99569 * 180.02562 * 14 13 12 16 16 C 1.47863 * 120.00046 * 0.02588 * 14 13 12 17 17 N 1.34543 * 126.04822 * 359.69461 * 16 14 13 18 18 C 1.30871 * 107.26883 * 179.86784 * 17 16 14 19 19 N 1.34589 * 107.62564 * 0.38548 * 18 17 16 20 20 H 0.96993 * 125.74935 * 179.77142 * 19 18 17 21 21 N 1.28844 * 108.50177 * 359.75548 * 19 18 17 22 22 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 23 23 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 24 24 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 25 25 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 26 26 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 27 27 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 28 28 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 29 29 H 1.08000 * 126.19031 * 180.12141 * 18 17 16 30 30 H 1.09003 * 109.87825 * 241.63649 * 22 13 12 31 31 H 1.09001 * 109.88209 * 120.47703 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0357 -4.6055 -2.8073 15 8 -0.6947 -3.9105 -3.5557 16 6 0.1473 -6.0428 -3.1022 17 7 0.8534 -6.9188 -2.3644 18 6 0.7688 -8.0827 -2.9569 19 7 0.0189 -7.9233 -4.0631 20 1 -0.2083 -8.6197 -4.6989 21 7 -0.3467 -6.6899 -4.1350 22 6 0.4282 -2.6578 -1.2974 23 1 -0.4850 0.8400 0.0004 24 1 -0.2247 -1.8680 1.2334 25 1 3.0948 -3.4670 -0.6886 26 1 2.5461 -3.9997 0.9358 27 1 1.9712 -5.5343 -1.2166 28 1 0.7139 -5.2644 0.0276 29 1 1.2226 -9.0035 -2.6215 30 1 -0.6140 -2.4001 -1.1087 31 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452246372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:52 Heat of formation + Delta-G solvation = 14.989209 kcal Electronic energy + Delta-G solvation = -18677.782398 eV Core-core repulsion = 15575.611542 eV Total energy + Delta-G solvation = -3102.170856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.44102 -39.15932 -37.09798 -34.35820 -33.40737 -32.14924 -31.35729 -29.98887 -27.81861 -25.78135 -23.78480 -22.90912 -22.05968 -19.62156 -19.40972 -18.33320 -17.14188 -16.39127 -16.29223 -15.74558 -15.13136 -14.65580 -14.40253 -14.13496 -13.01718 -12.91158 -12.80542 -12.21499 -12.02504 -11.57679 -11.41795 -11.04928 -10.82766 -10.74597 -10.53015 -10.44484 -10.30308 -10.02534 -9.71133 -9.64189 -9.23653 -8.63618 -8.27580 -7.82998 -6.25324 -4.33918 1.47730 2.19745 2.54745 3.23092 3.32056 3.35612 3.44794 3.74402 4.18913 4.30781 4.67850 4.83143 5.03360 5.61585 5.87333 5.94825 6.00440 6.14424 6.24068 6.48148 6.62726 6.65726 6.85820 6.94214 7.03860 7.31510 7.41978 7.77264 7.94219 8.05515 8.20094 8.66836 8.72081 9.34849 9.45592 10.82415 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.042148 B = 0.005732 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.172632 B = 4883.561708 C = 5159.904830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.104 3.896 13 N -0.588 5.588 14 C 0.611 3.389 15 O -0.532 6.532 16 C 0.165 3.835 17 N -0.478 5.478 18 C 0.189 3.811 19 N -0.406 5.406 20 H 0.449 0.551 21 N -0.257 5.257 22 C 0.104 3.896 23 H 0.270 0.730 24 H 0.384 0.616 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.228 0.772 30 H 0.068 0.932 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -15.575 -4.094 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.018 4.018 13 N -0.320 5.320 14 C 0.394 3.606 15 O -0.407 6.407 16 C -0.116 4.116 17 N -0.204 5.204 18 C -0.109 4.109 19 N -0.129 5.129 20 H 0.295 0.705 21 N -0.096 5.096 22 C -0.017 4.017 23 H 0.080 0.920 24 H 0.235 0.765 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.244 0.756 30 H 0.087 0.913 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.020 -15.101 -4.536 15.897 hybrid contribution -0.009 0.547 -0.517 0.752 sum 2.011 -14.555 -5.053 15.537 Atomic orbital electron populations 1.69655 1.06001 1.27854 1.49958 1.25092 0.95052 0.99798 0.93414 0.86343 0.80067 0.82737 0.77734 1.19577 1.20777 1.20761 1.21574 0.93790 0.90052 1.52013 0.91367 1.19505 0.86170 0.92308 0.81307 1.86096 1.53579 1.52682 1.47043 1.22798 0.97555 0.95144 1.00323 1.22520 0.93414 0.95098 0.90778 1.48497 1.48935 1.12779 1.21809 1.15943 0.80840 0.82367 0.81500 1.90804 1.40871 1.60511 1.48496 1.24059 0.99236 0.97291 0.91009 1.71488 1.20806 0.99275 1.28812 1.26697 0.97093 0.99982 0.87136 1.45253 1.37595 1.08329 1.21708 0.70480 1.74383 1.20854 0.91608 1.22783 1.23131 1.02058 0.77105 0.99382 0.91992 0.76493 0.90651 0.90507 0.89561 0.91784 0.75608 0.91344 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 10.97 55.43 0.61 -23.43 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.12 8.12 -34.44 -0.28 -14.40 16 8 H 0.07 1.77 7.77 -52.49 -0.41 1.36 16 9 C 0.25 6.10 0.86 -89.94 -0.08 6.03 16 10 O -0.58 -14.97 13.09 -35.23 -0.46 -15.43 16 11 C -0.12 -2.48 6.22 -24.59 -0.15 -2.64 16 12 C 0.10 2.01 6.13 -2.53 -0.02 2.00 16 13 N -0.59 -13.01 3.33 -171.62 -0.57 -13.58 16 14 C 0.61 13.53 7.86 -12.32 -0.10 13.44 16 15 O -0.53 -13.43 17.41 5.32 0.09 -13.34 16 16 C 0.16 2.98 7.79 -156.36 -1.22 1.76 16 17 N -0.48 -7.00 8.47 -12.36 -0.10 -7.11 16 18 C 0.19 1.71 13.14 -90.48 -1.19 0.52 16 19 N -0.41 -3.81 6.93 29.57 0.20 -3.61 16 20 H 0.45 1.95 8.96 -190.22 -1.71 0.25 16 21 N -0.26 -4.05 12.30 32.07 0.39 -3.65 16 22 C 0.10 2.60 5.39 -3.07 -0.02 2.58 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.38 10.07 7.17 45.56 0.33 10.39 16 25 H 0.07 1.49 8.04 -51.93 -0.42 1.08 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.49 6.14 -51.93 -0.32 1.18 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.23 0.71 8.06 -52.49 -0.42 0.28 16 30 H 0.07 1.84 8.01 -51.93 -0.42 1.43 16 31 H 0.07 1.86 7.82 -51.93 -0.41 1.45 16 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -33.66 270.71 -7.67 -41.33 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.75 Total: 8.17 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.14 Total: 11.02 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.53 Total: -51.38 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.37 Total: -28.77 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.66 -7.67 -41.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452246372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.317 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds