Wall clock time and date at job start Sun Mar 29 2020 22:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47079 * 300.00005 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00111 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34776 * 125.64926 * 155.82503 * 13 12 11 15 15 O 1.21554 * 119.99569 * 180.02562 * 14 13 12 16 16 C 1.47863 * 120.00046 * 0.02588 * 14 13 12 17 17 N 1.34543 * 126.04822 * 359.69461 * 16 14 13 18 18 C 1.30871 * 107.26883 * 179.86784 * 17 16 14 19 19 N 1.34589 * 107.62564 * 0.38548 * 18 17 16 20 20 H 0.96993 * 125.74935 * 179.77142 * 19 18 17 21 21 N 1.28844 * 108.50177 * 359.75548 * 19 18 17 22 22 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 23 23 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 24 24 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 25 25 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 26 26 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 27 27 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 28 28 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 29 29 H 1.08000 * 126.19031 * 180.12141 * 18 17 16 30 30 H 1.09003 * 109.87825 * 241.63649 * 22 13 12 31 31 H 1.09001 * 109.88209 * 120.47703 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0357 -4.6055 -2.8073 15 8 -0.6947 -3.9105 -3.5557 16 6 0.1473 -6.0428 -3.1022 17 7 0.8534 -6.9188 -2.3644 18 6 0.7688 -8.0827 -2.9569 19 7 0.0189 -7.9233 -4.0631 20 1 -0.2083 -8.6197 -4.6989 21 7 -0.3467 -6.6899 -4.1350 22 6 0.4282 -2.6578 -1.2974 23 1 -0.4850 0.8400 0.0004 24 1 -0.2247 -1.8680 1.2334 25 1 3.0948 -3.4670 -0.6886 26 1 2.5461 -3.9997 0.9358 27 1 1.9712 -5.5343 -1.2166 28 1 0.7139 -5.2644 0.0276 29 1 1.2226 -9.0035 -2.6215 30 1 -0.6140 -2.4001 -1.1087 31 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001452246372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:52 Heat of formation + Delta-G solvation = -11.547325 kcal Electronic energy + Delta-G solvation = -18678.933108 eV Core-core repulsion = 15575.611542 eV Total energy + Delta-G solvation = -3103.321566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.45739 -40.91646 -38.94390 -36.18682 -34.51541 -34.18646 -32.45617 -31.72555 -29.65526 -27.60225 -25.41622 -23.84355 -23.59473 -21.42777 -20.74061 -19.55456 -19.11598 -17.92367 -17.51950 -17.31929 -16.84863 -16.33382 -16.03469 -15.55589 -14.80549 -14.77076 -14.68310 -13.80857 -13.53987 -13.38444 -13.12032 -12.86180 -12.51999 -12.29591 -12.22922 -12.11183 -11.72117 -11.55352 -11.31613 -11.08988 -10.79830 -10.62775 -10.29735 -9.63069 -8.25671 -6.41959 0.27555 1.19818 1.41622 1.45217 1.51924 1.56631 2.20923 2.22328 2.39811 3.00637 3.05463 3.53994 3.86102 4.00547 4.12934 4.27318 4.45498 4.66973 4.77006 4.91064 5.02023 5.16235 5.23312 5.37211 5.38581 5.50471 5.75638 5.99667 6.06114 6.47649 6.66168 6.85162 7.10814 7.29676 7.37636 8.80954 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.042148 B = 0.005732 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.172632 B = 4883.561708 C = 5159.904830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.116 3.884 13 N -0.593 5.593 14 C 0.604 3.396 15 O -0.579 6.579 16 C 0.134 3.866 17 N -0.506 5.506 18 C 0.224 3.776 19 N -0.381 5.381 20 H 0.473 0.527 21 N -0.279 5.279 22 C 0.120 3.880 23 H 0.271 0.729 24 H 0.377 0.623 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.293 0.707 30 H 0.035 0.965 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -18.255 -4.084 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.151 4.151 12 C -0.005 4.005 13 N -0.325 5.325 14 C 0.390 3.610 15 O -0.458 6.458 16 C -0.146 4.146 17 N -0.233 5.233 18 C -0.072 4.072 19 N -0.107 5.107 20 H 0.324 0.676 21 N -0.120 5.120 22 C -0.003 4.003 23 H 0.080 0.920 24 H 0.227 0.773 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.308 0.692 30 H 0.054 0.946 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.636 -17.847 -4.527 18.768 hybrid contribution -0.533 1.212 -0.583 1.447 sum 3.103 -16.636 -5.110 17.677 Atomic orbital electron populations 1.69761 1.07193 1.28534 1.50307 1.25851 0.95807 1.02924 0.93020 0.85378 0.79161 0.78806 0.77531 1.18752 1.21034 1.20219 1.21881 0.94083 0.91145 1.52289 0.91155 1.19713 0.86609 0.93784 0.80525 1.86084 1.53596 1.52352 1.47555 1.22810 0.97036 0.93646 1.01638 1.22574 0.93006 0.94719 0.90189 1.48518 1.49568 1.11791 1.22633 1.16526 0.79590 0.84332 0.80539 1.90751 1.42713 1.62465 1.49852 1.23093 1.02535 0.95728 0.93223 1.71344 1.21557 1.00602 1.29826 1.27820 0.94273 1.00062 0.85083 1.45230 1.36328 1.06868 1.22276 0.67582 1.74253 1.21244 0.94065 1.22466 1.22686 0.99823 0.78811 0.98947 0.91961 0.77280 0.89809 0.88890 0.86841 0.91600 0.69180 0.94628 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.85 10.97 21.45 0.24 -50.61 16 2 C 0.02 1.31 5.27 84.65 0.45 1.75 16 3 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.56 -29.65 8.12 25.60 0.21 -29.44 16 8 H 0.07 3.63 7.77 -2.91 -0.02 3.61 16 9 C 0.23 11.75 0.86 -10.36 -0.01 11.74 16 10 O -0.59 -30.68 13.09 -148.98 -1.95 -32.63 16 11 C -0.11 -4.58 6.22 31.98 0.20 -4.38 16 12 C 0.12 4.37 6.13 86.86 0.53 4.90 16 13 N -0.59 -26.89 3.33 -815.17 -2.71 -29.61 16 14 C 0.60 27.57 7.86 86.79 0.68 28.25 16 15 O -0.58 -30.82 17.41 -3.89 -0.07 -30.89 16 16 C 0.13 4.70 7.79 137.12 1.07 5.77 16 17 N -0.51 -13.29 8.47 -193.03 -1.63 -14.93 16 18 C 0.22 2.92 13.14 180.30 2.37 5.29 16 19 N -0.38 -5.67 6.93 -60.37 -0.42 -6.08 16 20 H 0.47 1.99 8.96 -219.81 -1.97 0.02 16 21 N -0.28 -8.31 12.30 -52.44 -0.65 -8.95 16 22 C 0.12 6.28 5.39 86.72 0.47 6.74 16 23 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.38 20.53 7.17 -74.06 -0.53 20.00 16 25 H 0.08 3.22 8.04 -2.38 -0.02 3.20 16 26 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 27 H 0.11 3.67 6.14 -2.39 -0.01 3.65 16 28 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.29 -0.44 8.06 -2.91 -0.02 -0.46 16 30 H 0.04 2.04 8.01 -2.39 -0.02 2.03 16 31 H 0.04 2.29 7.82 -2.39 -0.02 2.27 16 Total: -1.00 -77.81 270.71 -0.51 -78.32 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -1.31 Total: 20.21 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 5.96 Total: 30.63 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.17 Total: -110.19 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -2.02 Total: -63.52 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -77.81 -0.51 -78.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452246372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.768 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds