Wall clock time and date at job start Sun Mar 29 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48500 * 109.47001 * 239.99981 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46855 * 120.00293 * 3 2 1 7 7 C 1.38950 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99728 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00221 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99830 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 10 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 C 1.50690 * 109.47185 * 180.02562 * 16 14 13 18 18 N 1.30501 * 125.65359 * 304.69263 * 17 16 14 19 19 C 1.34128 * 109.25710 * 179.89686 * 18 17 16 20 20 C 1.34658 * 108.02354 * 0.36696 * 19 18 17 21 21 N 1.35050 * 125.65046 * 125.00105 * 17 16 14 22 22 H 0.96999 * 126.39536 * 359.97438 * 21 17 16 23 23 H 0.96994 * 120.00439 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00112 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47545 * 60.00214 * 12 10 9 26 26 H 1.08998 * 109.47669 * 300.00156 * 12 10 9 27 27 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 28 28 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 29 29 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 30 30 H 1.08003 * 125.98561 * 180.12007 * 19 18 17 31 31 H 1.07997 * 126.59673 * 179.81804 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7467 -7.2471 0.0024 15 8 0.5544 -7.4687 0.0069 16 6 2.7261 -8.3926 0.0025 17 6 1.9726 -9.6976 0.0080 18 7 1.0721 -10.0523 0.8834 19 6 0.6129 -11.2743 0.5753 20 6 1.2588 -11.6961 -0.5284 21 7 2.1216 -10.6963 -0.8888 22 1 2.7270 -10.7038 -1.6466 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3906 -0.0016 25 1 0.6176 -4.9205 -0.8924 26 1 0.6169 -4.9209 0.8875 27 1 3.1497 -5.7991 -0.0022 28 1 3.3498 -8.3373 -0.8897 29 1 3.3556 -8.3322 0.8902 30 1 -0.1399 -11.8252 1.1196 31 1 1.1221 -12.6412 -1.0328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556511587.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:06 Heat of formation + Delta-G solvation = -44.924816 kcal Electronic energy + Delta-G solvation = -17327.032634 eV Core-core repulsion = 14222.263712 eV Total energy + Delta-G solvation = -3104.768923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.93424 -40.86393 -39.78711 -36.23227 -35.23807 -33.44283 -33.37178 -33.02116 -29.68462 -27.95189 -26.22878 -22.50205 -22.25428 -21.36221 -21.11448 -20.06668 -18.93210 -18.44752 -17.24143 -16.94000 -16.82778 -16.34073 -15.95978 -15.68458 -15.44851 -14.93297 -14.71479 -14.45383 -13.94044 -13.83372 -13.72673 -13.52518 -13.01056 -12.85663 -12.46234 -12.13229 -11.55058 -11.03304 -10.96236 -10.83374 -10.54685 -10.16909 -10.06838 -9.31000 -8.50190 -6.00714 1.10628 1.38874 1.43374 1.54460 1.65135 1.90968 1.92472 2.27612 2.28824 2.51827 3.15703 3.17057 3.39716 3.96052 4.06993 4.25276 4.39773 4.47048 4.47182 4.47818 4.63294 4.81610 5.17995 5.31067 5.39143 5.86442 5.92463 6.46711 6.53206 6.62978 7.03875 7.24467 7.25387 7.45564 7.94777 8.66603 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.076055 B = 0.003371 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.066271 B = 8304.519306 C = 8548.679576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.123 3.877 13 N -0.706 5.706 14 C 0.515 3.485 15 O -0.569 6.569 16 C -0.045 4.045 17 C 0.200 3.800 18 N -0.516 5.516 19 C -0.070 4.070 20 C -0.034 4.034 21 N -0.553 5.553 22 H 0.436 0.564 23 H 0.280 0.720 24 H 0.398 0.602 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.417 0.583 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.177 0.823 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -19.152 -3.607 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.301 3.699 15 O -0.447 6.447 16 C -0.086 4.086 17 C -0.065 4.065 18 N -0.236 5.236 19 C -0.217 4.217 20 C -0.169 4.169 21 N -0.158 5.158 22 H 0.277 0.723 23 H 0.089 0.911 24 H 0.232 0.768 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.255 0.745 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.194 0.806 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.610 -18.670 -2.916 19.451 hybrid contribution 0.326 0.536 -0.827 1.038 sum 4.936 -18.134 -3.743 19.163 Atomic orbital electron populations 1.69679 1.07089 1.29707 1.49326 1.26151 0.96517 1.02763 0.95774 0.84918 0.77699 0.76158 0.79163 1.19339 1.19751 1.19451 1.19728 0.93033 0.83531 1.50433 0.89378 1.41862 1.09581 1.04696 1.63488 1.20402 0.88139 0.85843 0.83474 1.90464 1.14983 1.87538 1.57972 1.20711 0.91832 0.84128 1.03859 1.45629 1.11348 1.04211 1.74976 1.20820 0.89757 0.83776 0.75547 1.90745 1.18629 1.84993 1.50320 1.19987 0.95704 0.83931 1.09022 1.22555 1.00189 0.93321 0.90459 1.70165 1.11257 1.14226 1.27968 1.22786 1.05347 0.93698 0.99916 1.23310 0.96235 0.96752 1.00563 1.43195 1.33421 1.14070 1.25098 0.72252 0.91085 0.76805 0.89071 0.89437 0.74464 0.83147 0.84180 0.80575 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.82 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.22 5.29 -306.98 -1.62 -29.84 16 10 C 0.43 19.87 7.85 87.66 0.69 20.56 16 11 O -0.62 -31.34 15.24 -3.08 -0.05 -31.39 16 12 C 0.12 4.50 6.15 85.63 0.53 5.02 16 13 N -0.71 -21.98 5.53 -466.78 -2.58 -24.56 16 14 C 0.51 15.47 7.82 87.66 0.69 16.15 16 15 O -0.57 -22.39 15.56 -3.03 -0.05 -22.44 16 16 C -0.05 -0.88 6.33 29.10 0.18 -0.69 16 17 C 0.20 4.75 6.95 138.12 0.96 5.71 16 18 N -0.52 -15.94 10.60 -188.14 -1.99 -17.93 16 19 C -0.07 -1.67 11.87 83.52 0.99 -0.68 16 20 C -0.03 -0.54 12.04 83.08 1.00 0.46 16 21 N -0.55 -8.62 6.15 -186.28 -1.15 -9.77 16 22 H 0.44 3.14 8.96 -92.71 -0.83 2.31 16 23 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 25 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.42 12.07 7.44 -92.70 -0.69 11.38 16 28 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -77.84 284.92 0.14 -77.70 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -1.05 Total: 34.76 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 6.32 Total: 28.64 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -7.06 Total: -130.93 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.09 Total: -53.83 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -77.84 0.14 -77.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556511587.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.775 kcal (2) G-P(sol) polarization free energy of solvation -77.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds