Wall clock time and date at job start Sun Mar 29 2020 23:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99643 * 3 2 1 6 6 H 1.48498 * 109.47416 * 60.00058 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38238 * 120.40266 * 269.71913 * 15 14 13 17 17 N 1.31846 * 120.81623 * 179.68473 * 16 15 14 18 18 C 1.31869 * 121.75517 * 0.62925 * 17 16 15 19 19 C 1.38426 * 120.72380 * 359.66226 * 18 17 16 20 20 F 1.35096 * 120.44499 * 179.97438 * 19 18 17 21 21 C 1.38586 * 120.40723 * 90.00441 * 15 14 13 22 22 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 24 24 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 25 25 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 26 26 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 29 29 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 30 30 H 1.07999 * 119.59375 * 359.97438 * 16 15 14 31 31 H 1.07996 * 119.63936 * 179.67911 * 18 17 16 32 32 H 1.08006 * 120.79989 * 359.97076 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.8639 -9.0781 -1.2070 17 7 3.7254 -10.0760 -1.2208 18 6 4.1806 -10.6154 -0.1068 19 6 3.7698 -10.1421 1.1274 20 9 4.2393 -10.6992 2.2651 21 6 2.8677 -9.0874 1.1805 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8898 25 1 2.8721 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 3.1359 -6.1343 -0.0004 28 1 0.8061 -7.4652 0.8818 29 1 0.8074 -7.4565 -0.8982 30 1 2.5098 -8.6663 -2.1405 31 1 4.8817 -11.4352 -0.1580 32 1 2.5292 -8.6965 2.1287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558296139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:06 Heat of formation + Delta-G solvation = -61.307214 kcal Electronic energy + Delta-G solvation = -17058.673757 eV Core-core repulsion = 13933.274478 eV Total energy + Delta-G solvation = -3125.399278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.36754 -40.63524 -39.10082 -35.29326 -33.47700 -32.66706 -31.52691 -30.83197 -27.23028 -25.31261 -24.16314 -22.63972 -21.48017 -19.79224 -17.86091 -17.72563 -17.27480 -16.83850 -16.24077 -15.72614 -15.66763 -15.11843 -14.42953 -14.33925 -13.83259 -13.67439 -13.49390 -13.32773 -13.02522 -12.44390 -12.19048 -11.95272 -11.19035 -10.95924 -10.60304 -10.36577 -10.06228 -9.99328 -9.70967 -9.48463 -9.17087 -9.00617 -8.93829 -8.34088 -5.98022 -4.02485 0.40465 0.60616 3.06181 3.16413 3.31568 3.38731 3.41871 3.52024 3.66281 3.97658 4.18043 4.30289 4.44600 4.46406 4.73670 5.04260 5.32017 5.37123 5.40024 5.43929 5.71614 5.73716 6.15359 6.18505 6.20094 6.54024 6.85084 7.35167 7.72193 7.76256 7.83231 8.04707 8.36043 8.68119 9.06127 9.61348 11.12940 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.043295 B = 0.003328 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.566196 B = 8412.003044 C = 8559.909418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.532 6.532 13 N -0.743 5.743 14 C 0.162 3.838 15 C -0.123 4.123 16 C 0.108 3.892 17 N -0.457 5.457 18 C 0.076 3.924 19 C 0.047 3.953 20 F -0.129 7.129 21 C -0.092 4.092 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.398 0.602 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -20.919 0.726 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.406 6.406 13 N -0.398 5.398 14 C 0.038 3.962 15 C -0.125 4.125 16 C -0.050 4.050 17 N -0.164 5.164 18 C -0.082 4.082 19 C 0.025 3.975 20 F -0.108 7.108 21 C -0.119 4.119 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.232 0.768 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.185 0.815 31 H 0.185 0.815 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.598 -21.133 -0.038 22.457 hybrid contribution 0.734 1.052 1.107 1.694 sum 8.332 -20.080 1.069 21.766 Atomic orbital electron populations 1.70008 1.06051 1.26504 1.50257 1.25030 0.94835 0.99264 0.95290 0.86532 0.80001 0.83806 0.77597 1.19747 1.21004 1.21014 1.21255 0.92976 0.90989 1.51312 0.92541 1.18914 0.93180 0.89378 0.98673 1.21878 1.00752 0.91694 1.02607 1.21631 0.88668 0.85467 0.74241 1.90684 1.14425 1.87497 1.48029 1.46278 1.10128 1.04866 1.78491 1.20056 0.91994 0.80282 1.03874 1.20946 0.99519 0.98795 0.93244 1.22930 0.92298 0.91671 0.98116 1.67812 1.09722 1.09388 1.29478 1.22993 0.99195 0.99798 0.86236 1.18819 0.98694 0.96323 0.83632 1.91542 1.86885 1.83986 1.48364 1.21700 0.95382 0.94446 1.00372 0.92986 0.95750 0.95801 0.90172 0.90116 0.76772 0.90328 0.89975 0.81506 0.81481 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 10 C -0.13 -2.53 5.64 -27.89 -0.16 -2.69 16 11 C 0.51 9.26 7.83 -10.98 -0.09 9.17 16 12 O -0.53 -11.96 15.98 5.55 0.09 -11.87 16 13 N -0.74 -9.40 5.55 -61.47 -0.34 -9.74 16 14 C 0.16 1.73 5.82 -5.19 -0.03 1.70 16 15 C -0.12 -1.07 5.26 -104.49 -0.55 -1.62 16 16 C 0.11 0.94 10.86 -17.55 -0.19 0.75 16 17 N -0.46 -4.36 10.36 -13.20 -0.14 -4.50 16 18 C 0.08 0.63 11.17 -17.47 -0.20 0.43 16 19 C 0.05 0.40 7.35 -39.27 -0.29 0.11 16 20 F -0.13 -1.18 17.28 2.25 0.04 -1.14 16 21 C -0.09 -0.77 9.85 -39.21 -0.39 -1.16 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.40 4.08 8.46 -40.82 -0.35 3.73 16 28 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -33.79 293.29 -6.31 -40.10 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.68 Total: -1.27 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.41 Total: -6.01 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.26 Total: -40.72 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.79 -6.31 -40.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558296139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.205 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds