Wall clock time and date at job start Sun Mar 29 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48506 * 109.46692 * 269.99699 * 3 2 1 5 5 H 1.48503 * 109.47299 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47411 * 149.99839 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 13 18 18 N 1.34777 * 120.00075 * 180.02562 * 17 16 15 19 19 O 1.21283 * 119.99808 * 359.97438 * 17 16 15 20 20 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 21 21 N 1.30903 * 108.38945 * 359.60960 * 20 11 10 22 22 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 24 24 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 25 25 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 26 26 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 27 27 H 1.08995 * 109.46638 * 300.00002 * 16 15 13 28 28 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 29 29 H 0.97000 * 119.99549 * 359.97438 * 18 17 16 30 30 H 0.96996 * 119.99887 * 179.97438 * 18 17 16 31 31 H 1.07999 * 125.80209 * 179.74829 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0463 -1.4002 5 1 1.4444 2.6527 0.6999 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 6 -1.3581 -8.8610 -0.0124 17 6 -1.2174 -10.3614 -0.0179 18 7 -2.3166 -11.1413 -0.0245 19 8 -0.1151 -10.8671 -0.0173 20 6 -0.3513 -3.8198 -0.0064 21 7 -0.0716 -2.5410 -0.0010 22 1 -0.4851 0.8401 -0.0004 23 1 2.9300 -3.8708 0.0032 24 1 1.8707 -6.3427 0.0017 25 1 0.5782 -8.5285 -0.8961 26 1 0.5737 -8.5362 0.8839 27 1 -1.9058 -8.5510 0.8775 28 1 -1.9014 -8.5433 -0.9024 29 1 -3.1983 -10.7368 -0.0253 30 1 -2.2260 -12.1070 -0.0284 31 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583623275.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:27 Heat of formation + Delta-G solvation = -30.986228 kcal Electronic energy + Delta-G solvation = -17480.468261 eV Core-core repulsion = 14376.303761 eV Total energy + Delta-G solvation = -3104.164500 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.69386 -40.68659 -39.88297 -35.91266 -34.92326 -34.61578 -33.62799 -32.18323 -29.72408 -27.26337 -26.02503 -22.87516 -22.05560 -21.18730 -20.96569 -19.34387 -18.32382 -18.02433 -17.42218 -16.98644 -16.98459 -16.75918 -15.82481 -15.69745 -15.10856 -14.94135 -14.82607 -14.10431 -13.85916 -13.45993 -13.29016 -12.95918 -12.89028 -12.81694 -12.11915 -12.07764 -11.79476 -11.03180 -10.98484 -10.82010 -10.61655 -10.60318 -10.08103 -8.49718 -8.45566 -6.22404 1.24100 1.40765 1.55791 1.58799 1.67015 1.89786 2.05849 2.27492 2.56100 2.74748 3.01429 3.10340 3.70983 4.11154 4.19538 4.29970 4.46483 4.63665 4.72909 4.92212 5.02067 5.02607 5.13230 5.31862 5.53226 5.94913 5.97843 6.34609 6.47870 6.76098 6.80661 7.37538 7.43947 7.49571 7.70975 8.53983 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.085271 B = 0.003610 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.285666 B = 7754.062197 C = 8061.883303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.355 4.355 8 H 0.140 0.860 9 N -0.170 5.170 10 C -0.083 4.083 11 C -0.046 4.046 12 N -0.620 5.620 13 C 0.499 3.501 14 O -0.577 6.577 15 C -0.107 4.107 16 C -0.123 4.123 17 C 0.522 3.478 18 N -0.838 5.838 19 O -0.589 6.589 20 C -0.059 4.059 21 N -0.311 5.311 22 H 0.276 0.724 23 H 0.186 0.814 24 H 0.420 0.580 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.418 0.582 30 H 0.408 0.592 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -15.623 -0.015 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.486 4.486 8 H 0.157 0.843 9 N 0.061 4.939 10 C -0.233 4.233 11 C -0.152 4.152 12 N -0.265 5.265 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.148 4.148 16 C -0.164 4.164 17 C 0.307 3.693 18 N -0.402 5.402 19 O -0.470 6.470 20 C -0.235 4.235 21 N -0.143 5.143 22 H 0.086 0.914 23 H 0.203 0.797 24 H 0.257 0.743 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.249 0.751 30 H 0.239 0.761 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.526 -14.120 -0.006 14.130 hybrid contribution 0.328 -0.453 -0.013 0.559 sum -0.198 -14.573 -0.020 14.575 Atomic orbital electron populations 1.70399 1.08391 1.29049 1.37485 1.26873 0.96492 1.04302 0.94173 0.84590 0.78272 0.74096 0.79215 1.18907 1.20181 1.16800 1.20602 0.92934 0.80956 1.54121 0.84293 1.44838 1.03660 1.04788 1.40652 1.22017 0.98856 0.84306 1.18147 1.17401 0.92807 0.84008 1.20960 1.42548 1.10161 1.02283 1.71472 1.21275 0.83501 0.90435 0.76068 1.90576 1.27287 1.76338 1.51468 1.21260 0.99282 0.87419 1.06798 1.21333 0.98236 0.90065 1.06719 1.20730 0.84245 0.90188 0.74091 1.43720 1.09186 1.10902 1.76365 1.90732 1.27513 1.76856 1.51924 1.24209 0.99117 0.90835 1.09313 1.78131 0.91996 1.16724 1.27443 0.91425 0.79683 0.74338 0.87043 0.87044 0.87394 0.87392 0.75114 0.76059 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.91 11.81 21.66 0.26 -47.66 16 2 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 3 Si 1.02 38.80 29.55 68.60 2.03 40.83 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 7 C -0.36 -18.98 10.25 84.01 0.86 -18.12 16 8 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 9 N -0.17 -9.54 3.74 -190.02 -0.71 -10.25 16 10 C -0.08 -3.87 11.49 83.37 0.96 -2.92 16 11 C -0.05 -2.09 6.90 37.73 0.26 -1.83 16 12 N -0.62 -20.95 5.47 -303.92 -1.66 -22.61 16 13 C 0.50 16.09 7.80 87.66 0.68 16.78 16 14 O -0.58 -23.29 13.14 -3.10 -0.04 -23.33 16 15 C -0.11 -2.35 4.99 29.85 0.15 -2.20 16 16 C -0.12 -2.33 4.99 29.85 0.15 -2.18 16 17 C 0.52 9.75 8.10 87.66 0.71 10.46 16 18 N -0.84 -8.81 8.87 -173.53 -1.54 -10.35 16 19 O -0.59 -15.73 16.82 -3.04 -0.05 -15.78 16 20 C -0.06 -3.23 10.85 85.42 0.93 -2.31 16 21 N -0.31 -18.86 10.40 -56.47 -0.59 -19.44 16 22 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 24 H 0.42 10.46 8.83 -92.71 -0.82 9.64 16 25 H 0.11 2.20 8.10 -2.38 -0.02 2.18 16 26 H 0.11 2.20 8.10 -2.39 -0.02 2.18 16 27 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 28 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 29 H 0.42 2.13 8.83 -92.71 -0.82 1.31 16 30 H 0.41 3.43 8.93 -92.71 -0.83 2.60 16 31 H 0.17 9.21 5.92 -2.91 -0.02 9.19 16 Total: -1.00 -80.68 281.08 1.60 -79.08 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.25 Total: 31.74 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.17 Total: -2.22 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.24 Total: -110.31 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.09 Total: -39.11 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -80.68 1.60 -79.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623275.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.091 kcal (2) G-P(sol) polarization free energy of solvation -80.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds