Wall clock time and date at job start Sun Mar 29 2020 22:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33318 * 126.10574 * 2 1 4 4 C 1.30863 * 109.68510 * 179.76803 * 3 2 1 5 5 N 1.34497 * 109.16126 * 0.41168 * 4 3 2 6 6 H 0.97001 * 126.47393 * 179.86674 * 5 4 3 7 7 C 1.36660 * 126.10716 * 180.02562 * 2 1 3 8 8 C 1.46767 * 126.84829 * 359.97438 * 7 2 1 9 9 O 1.21688 * 119.99704 * 359.96673 * 8 7 2 10 10 N 1.34771 * 120.00285 * 179.97438 * 8 7 2 11 11 C 1.46504 * 119.99957 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46907 * 179.97438 * 11 10 8 13 13 O 1.21287 * 119.99940 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99804 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00054 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99946 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00085 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00000 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47118 * 89.99947 * 19 17 15 21 21 H 1.48498 * 109.47047 * 209.99727 * 19 17 15 22 22 H 1.48499 * 109.46811 * 329.99742 * 19 17 15 23 23 H 1.09001 * 109.47328 * 269.97186 * 1 2 3 24 24 H 1.08991 * 109.47030 * 29.97797 * 1 2 3 25 25 H 1.09009 * 109.46920 * 149.97990 * 1 2 3 26 26 H 1.07995 * 125.41952 * 180.25005 * 4 3 2 27 27 H 0.96999 * 120.00020 * 359.97438 * 10 8 7 28 28 H 1.08996 * 109.47353 * 299.99794 * 11 10 8 29 29 H 1.09002 * 109.47038 * 60.00520 * 11 10 8 30 30 H 0.97002 * 119.99735 * 359.97438 * 14 12 11 31 31 H 0.97002 * 120.00459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7072 0.0050 5 7 3.6122 -0.6362 -0.0007 6 1 4.4189 -1.1749 -0.0007 7 6 2.3124 -1.1041 -0.0005 8 6 1.8822 -2.5073 -0.0006 9 8 0.6962 -2.7801 0.0004 10 7 2.8005 -3.4937 -0.0016 11 6 2.3710 -4.8944 -0.0012 12 6 3.5821 -5.7912 -0.0032 13 8 4.6946 -5.3078 -0.0053 14 7 3.4291 -7.1302 -0.0036 15 6 4.5309 -7.9461 -0.0049 16 1 5.5215 -7.5157 -0.0060 17 6 4.3732 -9.3266 -0.0049 18 7 3.1679 -9.8502 -0.0031 19 14 5.8745 -10.4382 -0.0073 20 1 6.2744 -10.7330 1.3921 21 1 5.5496 -11.7072 -0.7070 22 1 6.9927 -9.7582 -0.7091 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 4.3970 1.3744 0.0100 27 1 3.7458 -3.2763 -0.0027 28 1 1.7742 -5.0912 0.8895 29 1 1.7723 -5.0911 -0.8905 30 1 2.5394 -7.5167 -0.0023 31 1 3.0577 -10.8139 -0.0027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636041406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:26 Heat of formation + Delta-G solvation = -48.365782 kcal Electronic energy + Delta-G solvation = -17597.521086 eV Core-core repulsion = 14492.602952 eV Total energy + Delta-G solvation = -3104.918134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.22821 -40.82427 -39.75851 -36.33335 -35.54210 -34.11682 -33.40460 -32.23625 -29.70967 -27.98714 -26.42098 -23.95419 -22.25559 -21.48031 -20.85298 -20.14979 -19.77966 -17.80453 -17.21416 -17.01966 -16.90497 -16.30247 -16.23808 -15.77938 -15.32772 -15.17229 -14.99271 -14.02495 -13.93252 -13.72427 -13.61999 -13.56484 -13.08394 -12.92425 -12.47818 -12.13933 -11.59878 -11.59227 -11.04737 -11.00748 -10.60603 -10.38242 -10.12095 -9.53949 -8.53213 -6.03705 0.22273 1.34989 1.42291 1.54436 1.80066 1.81822 1.87759 2.05514 2.19651 2.29308 3.06759 3.14202 3.52716 3.76808 4.06450 4.21219 4.28151 4.39151 4.41258 4.70410 4.83827 4.98560 5.00453 5.17103 5.36251 5.54578 5.88826 6.25776 6.37147 6.45122 6.88428 6.96870 7.01124 7.40982 7.90503 8.63518 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051530 B = 0.003933 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.242999 B = 7118.052713 C = 7640.847775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.533 5.533 4 C 0.243 3.757 5 N -0.545 5.545 6 H 0.437 0.563 7 C -0.113 4.113 8 C 0.594 3.406 9 O -0.556 6.556 10 N -0.705 5.705 11 C 0.122 3.878 12 C 0.432 3.568 13 O -0.625 6.625 14 N -0.557 5.557 15 C -0.339 4.339 16 H 0.087 0.913 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.399 0.601 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 15.203 0.031 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 N -0.253 5.253 4 C -0.041 4.041 5 N -0.151 5.151 6 H 0.279 0.721 7 C -0.229 4.229 8 C 0.383 3.617 9 O -0.435 6.435 10 N -0.358 5.358 11 C -0.005 4.005 12 C 0.219 3.781 13 O -0.514 6.514 14 N -0.192 5.192 15 C -0.468 4.468 16 H 0.105 0.895 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.194 1.194 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.281 0.719 27 H 0.247 0.753 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.486 15.839 0.018 15.846 hybrid contribution 1.284 -1.971 0.021 2.352 sum 0.797 13.868 0.038 13.891 Atomic orbital electron populations 1.20276 0.86195 1.03532 1.03294 1.21345 0.97622 0.87025 0.99045 1.70169 1.01839 1.30403 1.22939 1.26145 0.97749 0.82131 0.98078 1.43377 1.07552 1.09328 1.54818 0.72103 1.20633 0.86031 0.93789 1.22476 1.17010 0.85335 0.83237 0.76166 1.90790 1.16982 1.83508 1.52223 1.45521 1.10614 1.04981 1.74720 1.20830 0.94571 0.80416 1.04724 1.20368 0.90547 0.83447 0.83767 1.90454 1.27573 1.75061 1.58298 1.41837 1.09772 1.04473 1.63119 1.19745 0.88277 0.88231 1.50548 0.89467 1.26126 1.00972 0.98228 0.95671 1.69673 1.22873 1.13875 1.49051 0.84873 0.77288 0.77151 0.78719 1.19564 1.19714 1.19372 0.90322 0.89926 0.90533 0.71918 0.75348 0.88319 0.88331 0.76634 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 9.88 71.24 0.70 -1.12 16 2 C 0.08 2.26 7.15 41.96 0.30 2.56 16 3 N -0.53 -12.70 11.20 -187.59 -2.10 -14.80 16 4 C 0.24 3.86 13.01 180.33 2.35 6.21 16 5 N -0.55 -9.92 6.07 -188.04 -1.14 -11.06 16 6 H 0.44 5.83 8.32 -92.71 -0.77 5.06 16 7 C -0.11 -3.00 7.08 40.01 0.28 -2.72 16 8 C 0.59 18.59 7.79 86.47 0.67 19.26 16 9 O -0.56 -20.00 14.82 -4.31 -0.06 -20.07 16 10 N -0.70 -22.05 5.52 -470.72 -2.60 -24.65 16 11 C 0.12 4.24 6.15 85.63 0.53 4.76 16 12 C 0.43 19.08 7.85 87.66 0.69 19.77 16 13 O -0.63 -30.74 15.24 -3.05 -0.05 -30.78 16 14 N -0.56 -27.08 5.29 -306.98 -1.62 -28.71 16 15 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16 16 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 17 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 18 N -0.91 -47.65 13.05 21.66 0.28 -47.37 16 19 Si 1.00 40.73 29.55 68.60 2.03 42.76 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 2.05 6.48 -2.38 -0.02 2.04 16 26 H 0.27 1.16 8.06 -2.91 -0.02 1.14 16 27 H 0.41 12.12 6.68 -92.71 -0.62 11.50 16 28 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 30 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 31 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -68.74 281.62 0.63 -68.11 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.91 Total: 35.19 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 6.80 Total: 31.37 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -7.18 Total: -126.59 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.11 Total: -50.85 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -68.74 0.63 -68.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636041406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.749 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds