Wall clock time and date at job start Sun Mar 29 2020 22:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47367 * 274.99155 * 3 2 1 5 5 H 1.48501 * 109.46871 * 34.98707 * 3 2 1 6 6 H 1.48496 * 109.47175 * 154.98501 * 3 2 1 7 7 C 1.40045 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00414 * 186.14406 * 7 2 1 9 9 C 1.46381 * 119.99630 * 6.15350 * 7 2 1 10 10 O 1.21690 * 120.00128 * 353.93424 * 9 7 2 11 11 N 1.34781 * 119.99754 * 173.93977 * 9 7 2 12 12 C 1.46501 * 119.99803 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47053 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47100 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00118 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.38920 * 120.00345 * 179.97438 * 16 14 13 18 18 N 1.31128 * 125.78400 * 179.68826 * 17 16 14 19 19 C 1.34278 * 109.29377 * 179.83768 * 18 17 16 20 20 C 1.34488 * 108.29866 * 0.43094 * 19 18 17 21 21 N 1.36005 * 125.78169 * 0.02562 * 17 16 14 22 22 H 0.97011 * 126.47990 * 0.02562 * 21 17 16 23 23 H 0.97005 * 119.99835 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00118 * 359.97438 * 11 9 7 25 25 H 1.09003 * 109.46822 * 59.99452 * 12 11 9 26 26 H 1.09001 * 109.47370 * 300.00301 * 12 11 9 27 27 H 1.08998 * 109.47231 * 60.00239 * 13 12 11 28 28 H 1.09009 * 109.47227 * 300.00132 * 13 12 11 29 29 H 0.97005 * 120.00190 * 359.97438 * 16 14 13 30 30 H 1.07997 * 125.85301 * 180.17810 * 19 18 17 31 31 H 1.08001 * 126.52776 * 179.74378 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0822 -1.2156 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4826 -0.1389 11 7 1.9610 -3.6341 -0.2604 12 6 1.2348 -4.8991 -0.3964 13 6 2.2348 -6.0505 -0.5196 14 6 1.4877 -7.3517 -0.6601 15 8 0.2750 -7.3577 -0.6611 16 7 2.1674 -8.5090 -0.7836 17 6 1.4788 -9.7086 -0.9126 18 7 2.0226 -10.8944 -1.0451 19 6 1.0534 -11.8190 -1.1391 20 6 -0.1351 -11.1931 -1.0729 21 7 0.1264 -9.8514 -0.9294 22 1 -0.5296 -9.1407 -0.8545 23 1 -0.4850 0.8401 0.0004 24 1 2.9310 -3.6294 -0.2591 25 1 0.6090 -4.8647 -1.2883 26 1 0.6077 -5.0543 0.4815 27 1 2.8608 -6.0850 0.3721 28 1 2.8615 -5.8950 -1.3978 29 1 3.1374 -8.5043 -0.7824 30 1 1.2027 -12.8826 -1.2530 31 1 -1.1093 -11.6565 -1.1233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638590339.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:08 Heat of formation + Delta-G solvation = -12.957682 kcal Electronic energy + Delta-G solvation = -17347.794109 eV Core-core repulsion = 14244.411385 eV Total energy + Delta-G solvation = -3103.382724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26803 -39.98171 -37.32474 -35.13981 -34.03430 -32.52608 -32.40323 -30.49623 -28.60200 -26.39476 -23.92336 -22.10249 -21.36171 -20.65035 -19.78826 -18.64608 -17.42817 -17.04214 -16.30825 -16.08328 -15.33029 -15.12044 -14.58128 -14.19500 -13.95364 -13.81835 -13.75351 -13.45393 -12.41646 -12.30481 -11.48855 -11.20269 -11.16092 -11.10912 -10.79566 -10.55221 -10.45025 -10.28849 -10.24274 -10.17340 -8.87709 -8.14310 -7.66098 -7.59066 -6.22438 -4.67224 1.62281 2.18922 2.32259 3.07158 3.12202 3.18447 3.20467 3.23071 4.07009 4.32269 4.56101 4.75284 4.85600 5.08694 5.09100 5.20504 5.34034 5.48112 5.57012 5.75380 5.93079 6.40326 6.44393 6.52285 6.77464 7.32899 7.40804 7.63453 7.86514 7.89376 8.01127 8.28068 8.99419 9.47025 10.56518 10.74571 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.081744 B = 0.003312 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.451898 B = 8451.334413 C = 8768.924087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.554 3.446 10 O -0.578 6.578 11 N -0.770 5.770 12 C 0.147 3.853 13 C -0.144 4.144 14 C 0.528 3.472 15 O -0.524 6.524 16 N -0.632 5.632 17 C 0.434 3.566 18 N -0.513 5.513 19 C -0.014 4.014 20 C -0.060 4.060 21 N -0.561 5.561 22 H 0.434 0.566 23 H 0.269 0.731 24 H 0.380 0.620 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.432 0.568 30 H 0.175 0.825 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 -17.505 -1.893 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.427 5.427 12 C 0.021 3.979 13 C -0.184 4.184 14 C 0.316 3.684 15 O -0.397 6.397 16 N -0.285 5.285 17 C 0.081 3.919 18 N -0.240 5.240 19 C -0.162 4.162 20 C -0.194 4.194 21 N -0.177 5.177 22 H 0.280 0.720 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.271 0.729 30 H 0.192 0.808 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.380 -17.490 -1.903 18.130 hybrid contribution 0.264 1.102 0.015 1.134 sum 4.644 -16.387 -1.888 17.137 Atomic orbital electron populations 1.70028 1.07118 1.27340 1.35089 1.25719 0.94609 1.00364 0.92622 0.86343 0.80189 0.81440 0.78676 1.19803 1.20457 1.18878 1.20870 0.94095 0.89482 1.53887 0.91300 1.18248 0.87183 0.82278 0.76495 1.90619 1.14110 1.86287 1.55027 1.46156 1.08534 1.05602 1.82359 1.20572 0.92752 0.82429 1.02116 1.21875 1.00387 0.90703 1.05424 1.21168 0.88126 0.84906 0.74182 1.90548 1.14387 1.86227 1.48565 1.42667 1.11313 1.02018 1.72523 1.19487 0.80309 0.87942 1.04130 1.70350 1.32533 0.96402 1.24753 1.22131 0.87737 0.99083 1.07268 1.22750 1.01422 0.82529 1.12703 1.43861 1.07257 1.09890 1.56675 0.72026 0.92053 0.78846 0.92405 0.92404 0.87489 0.87488 0.72901 0.80828 0.80256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.85 55.55 0.66 -22.34 16 2 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 3 Si 0.91 19.86 29.56 -169.99 -5.03 14.83 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.55 -15.17 9.53 -35.63 -0.34 -15.51 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 15.59 7.74 -12.98 -0.10 15.49 16 10 O -0.58 -18.87 15.05 5.20 0.08 -18.79 16 11 N -0.77 -16.32 5.55 -61.72 -0.34 -16.66 16 12 C 0.15 2.70 4.96 -4.04 -0.02 2.68 16 13 C -0.14 -1.65 5.81 -27.89 -0.16 -1.81 16 14 C 0.53 6.58 7.79 -10.99 -0.09 6.50 16 15 O -0.52 -8.28 13.48 5.56 0.07 -8.21 16 16 N -0.63 -6.64 5.40 -12.53 -0.07 -6.71 16 17 C 0.43 5.51 8.79 -319.11 -2.80 2.71 16 18 N -0.51 -6.62 11.28 -13.83 -0.16 -6.77 16 19 C -0.01 -0.15 11.85 -17.81 -0.21 -0.36 16 20 C -0.06 -0.58 12.04 -16.36 -0.20 -0.78 16 21 N -0.56 -6.76 5.81 -13.10 -0.08 -6.84 16 22 H 0.43 5.40 6.45 -40.82 -0.26 5.13 16 23 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 24 H 0.38 6.66 8.45 -40.82 -0.35 6.32 16 25 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 26 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.43 3.17 8.82 -40.82 -0.36 2.81 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -37.84 281.78 -7.67 -45.51 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.05 Total: 10.52 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -4.01 Total: 11.21 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.02 Total: -59.32 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: 0.15 Total: -27.00 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -37.84 -7.67 -45.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638590339.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.549 kcal (2) G-P(sol) polarization free energy of solvation -37.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds