Wall clock time and date at job start Sun Mar 29 2020 22:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47367 * 274.99155 * 3 2 1 5 5 H 1.48501 * 109.46871 * 34.98707 * 3 2 1 6 6 H 1.48496 * 109.47175 * 154.98501 * 3 2 1 7 7 C 1.40045 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00414 * 186.14406 * 7 2 1 9 9 C 1.46381 * 119.99630 * 6.15350 * 7 2 1 10 10 O 1.21690 * 120.00128 * 353.93424 * 9 7 2 11 11 N 1.34781 * 119.99754 * 173.93977 * 9 7 2 12 12 C 1.46501 * 119.99803 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47053 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47100 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00118 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.38920 * 120.00345 * 179.97438 * 16 14 13 18 18 N 1.31128 * 125.78400 * 179.68826 * 17 16 14 19 19 C 1.34278 * 109.29377 * 179.83768 * 18 17 16 20 20 C 1.34488 * 108.29866 * 0.43094 * 19 18 17 21 21 N 1.36005 * 125.78169 * 0.02562 * 17 16 14 22 22 H 0.97011 * 126.47990 * 0.02562 * 21 17 16 23 23 H 0.97005 * 119.99835 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00118 * 359.97438 * 11 9 7 25 25 H 1.09003 * 109.46822 * 59.99452 * 12 11 9 26 26 H 1.09001 * 109.47370 * 300.00301 * 12 11 9 27 27 H 1.08998 * 109.47231 * 60.00239 * 13 12 11 28 28 H 1.09009 * 109.47227 * 300.00132 * 13 12 11 29 29 H 0.97005 * 120.00190 * 359.97438 * 16 14 13 30 30 H 1.07997 * 125.85301 * 180.17810 * 19 18 17 31 31 H 1.08001 * 126.52776 * 179.74378 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5920 7 6 2.0069 -1.2128 -0.0005 8 1 3.0822 -1.2156 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4826 -0.1389 11 7 1.9610 -3.6341 -0.2604 12 6 1.2348 -4.8991 -0.3964 13 6 2.2348 -6.0505 -0.5196 14 6 1.4877 -7.3517 -0.6601 15 8 0.2750 -7.3577 -0.6611 16 7 2.1674 -8.5090 -0.7836 17 6 1.4788 -9.7086 -0.9126 18 7 2.0226 -10.8944 -1.0451 19 6 1.0534 -11.8190 -1.1391 20 6 -0.1351 -11.1931 -1.0729 21 7 0.1264 -9.8514 -0.9294 22 1 -0.5296 -9.1407 -0.8545 23 1 -0.4850 0.8401 0.0004 24 1 2.9310 -3.6294 -0.2591 25 1 0.6090 -4.8647 -1.2883 26 1 0.6077 -5.0543 0.4815 27 1 2.8608 -6.0850 0.3721 28 1 2.8615 -5.8950 -1.3978 29 1 3.1374 -8.5043 -0.7824 30 1 1.2027 -12.8826 -1.2530 31 1 -1.1093 -11.6565 -1.1233 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638590339.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:08 Heat of formation + Delta-G solvation = -42.625491 kcal Electronic energy + Delta-G solvation = -17349.080602 eV Core-core repulsion = 14244.411385 eV Total energy + Delta-G solvation = -3104.669217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.13526 -41.00725 -39.33951 -36.10839 -35.76281 -34.53561 -33.39774 -31.96224 -29.61453 -28.31797 -25.30655 -23.11068 -22.28562 -21.75604 -21.62768 -19.54361 -19.22273 -18.23424 -17.43735 -17.32513 -16.94656 -16.17876 -16.09226 -15.89667 -15.22509 -15.05506 -14.74310 -14.42832 -14.29134 -14.00474 -13.06730 -12.87162 -12.81285 -12.57714 -12.36709 -12.03142 -11.98779 -11.54530 -11.20008 -11.07450 -10.92988 -9.89405 -9.52736 -8.97800 -8.29793 -6.84871 0.69682 1.30429 1.42689 1.43523 1.46602 1.59935 2.19281 2.24182 2.32708 2.47577 3.08364 3.52159 3.61239 3.94712 3.99479 4.11117 4.37340 4.50533 4.58391 4.71429 4.90131 4.99485 5.12622 5.33784 5.66608 5.87596 5.97724 6.20260 6.27615 6.42617 6.72951 6.87462 7.04399 7.56746 8.49465 8.67681 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.081744 B = 0.003312 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.451898 B = 8451.334413 C = 8768.924087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.571 4.571 8 H 0.095 0.905 9 C 0.534 3.466 10 O -0.637 6.637 11 N -0.751 5.751 12 C 0.150 3.850 13 C -0.123 4.123 14 C 0.531 3.469 15 O -0.564 6.564 16 N -0.614 5.614 17 C 0.407 3.593 18 N -0.530 5.530 19 C -0.031 4.031 20 C -0.053 4.053 21 N -0.571 5.571 22 H 0.430 0.570 23 H 0.274 0.726 24 H 0.402 0.598 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.446 0.554 30 H 0.202 0.798 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -17.888 -2.017 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.607 4.607 8 H 0.113 0.887 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.024 3.976 13 C -0.163 4.163 14 C 0.319 3.681 15 O -0.441 6.441 16 N -0.268 5.268 17 C 0.054 3.946 18 N -0.257 5.257 19 C -0.178 4.178 20 C -0.187 4.187 21 N -0.186 5.186 22 H 0.275 0.725 23 H 0.084 0.916 24 H 0.237 0.763 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.289 0.711 30 H 0.219 0.781 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.026 -17.950 -2.033 19.383 hybrid contribution -0.559 1.072 0.048 1.210 sum 6.467 -16.878 -1.984 18.183 Atomic orbital electron populations 1.70213 1.09762 1.28971 1.36540 1.27053 0.95485 1.05253 0.91200 0.84956 0.78998 0.74908 0.79093 1.18876 1.20115 1.16677 1.21456 0.95464 0.89932 1.53875 0.88690 1.18711 0.86768 0.84465 0.76216 1.90574 1.16643 1.87591 1.57594 1.45682 1.09573 1.05020 1.80456 1.20488 0.94019 0.83657 0.99405 1.21697 0.98625 0.87172 1.08808 1.21226 0.87582 0.85577 0.73684 1.90550 1.16169 1.86777 1.50593 1.42419 1.11911 1.00979 1.71451 1.19782 0.80801 0.88457 1.05542 1.70334 1.33574 0.96851 1.24983 1.22714 0.87561 1.00189 1.07295 1.23415 1.02901 0.81584 1.10784 1.44036 1.07170 1.10703 1.56691 0.72473 0.91622 0.76255 0.95371 0.95319 0.83934 0.83959 0.71105 0.78098 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.86 11.85 21.83 0.26 -50.60 16 2 C 0.02 1.37 5.49 85.30 0.47 1.84 16 3 Si 1.00 40.17 29.56 68.60 2.03 42.20 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.57 -31.57 9.53 24.83 0.24 -31.33 16 8 H 0.10 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.53 30.70 7.74 86.36 0.67 31.37 16 10 O -0.64 -43.51 15.05 -4.32 -0.06 -43.57 16 11 N -0.75 -31.60 5.55 -467.40 -2.59 -34.20 16 12 C 0.15 5.58 4.96 86.38 0.43 6.01 16 13 C -0.12 -2.57 5.81 29.85 0.17 -2.40 16 14 C 0.53 12.73 7.79 87.66 0.68 13.42 16 15 O -0.56 -18.23 13.48 -3.02 -0.04 -18.28 16 16 N -0.61 -11.98 5.40 -311.96 -1.68 -13.67 16 17 C 0.41 9.93 8.79 260.19 2.29 12.22 16 18 N -0.53 -12.95 11.28 -197.67 -2.23 -15.18 16 19 C -0.03 -0.59 11.85 83.46 0.99 0.40 16 20 C -0.05 -0.96 12.04 82.95 1.00 0.04 16 21 N -0.57 -13.43 5.81 -195.35 -1.13 -14.57 16 22 H 0.43 10.83 6.45 -92.70 -0.60 10.24 16 23 H 0.27 15.28 8.29 -92.70 -0.77 14.51 16 24 H 0.40 13.23 8.45 -92.71 -0.78 12.45 16 25 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 26 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 27 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.45 5.51 8.82 -92.70 -0.82 4.69 16 30 H 0.20 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -87.10 281.78 0.48 -86.63 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.99 Total: 29.66 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 6.93 Total: 31.57 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -7.38 Total: -128.22 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -0.11 Total: -61.85 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -87.10 0.48 -86.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638590339.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.002 kcal (2) G-P(sol) polarization free energy of solvation -87.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds