Wall clock time and date at job start Sun Mar 29 2020 23:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35692 * 124.85845 * 125.00116 * 3 2 1 5 5 C 1.36334 * 107.00096 * 179.97438 * 4 3 2 6 6 N 1.39740 * 127.33432 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00067 * 359.97438 * 6 5 4 8 8 O 1.21780 * 120.00083 * 359.97438 * 7 6 5 9 9 C 1.41794 * 120.00145 * 180.02562 * 7 6 5 10 10 H 1.08006 * 119.99888 * 359.97438 * 9 7 6 11 11 C 1.40132 * 120.00298 * 179.97438 * 9 7 6 12 12 N 1.30629 * 119.99942 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99975 * 179.97438 * 11 9 7 14 14 H 1.48488 * 109.47369 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47048 * 120.00046 * 13 11 9 16 16 H 1.48510 * 109.46901 * 239.99640 * 13 11 9 17 17 C 1.42008 * 105.32947 * 0.02562 * 5 4 3 18 18 C 1.47503 * 126.47981 * 180.02562 * 17 5 4 19 19 N 1.34780 * 120.00000 * 179.97438 * 18 17 5 20 20 O 1.21587 * 120.00194 * 359.97438 * 18 17 5 21 21 N 1.28421 * 124.86632 * 304.69856 * 3 2 1 22 22 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.07996 * 126.49669 * 359.97438 * 4 3 2 28 28 H 0.97001 * 119.99923 * 179.97438 * 6 5 4 29 29 H 0.96998 * 120.00376 * 179.97438 * 12 11 9 30 30 H 0.97000 * 119.99711 * 359.97438 * 19 18 17 31 31 H 0.96999 * 119.99880 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8790 1.8996 0.9121 5 6 3.0859 3.2028 0.5693 6 7 3.8995 4.1321 1.2228 7 6 4.5870 3.7693 2.3238 8 8 4.4988 2.6316 2.7493 9 6 5.4121 4.7124 2.9873 10 1 5.4900 5.7215 2.6102 11 6 6.1266 4.3353 4.1323 12 7 6.0320 3.1150 4.5888 13 14 7.2141 5.5776 5.0059 14 1 7.1493 6.8792 4.2942 15 1 6.7421 5.7527 6.4030 16 1 8.6162 5.0882 5.0149 17 6 2.2976 3.4151 -0.5927 18 6 2.1783 4.6730 -1.3537 19 7 1.3882 4.7285 -2.4442 20 8 2.7927 5.6598 -0.9974 21 7 1.6975 2.2734 -0.8663 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.3170 1.3785 1.7505 28 1 3.9694 5.0384 0.8841 29 1 6.5268 2.8538 5.3811 30 1 0.8983 3.9411 -2.7287 31 1 1.3094 5.5558 -2.9445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649199384.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:15 Heat of formation + Delta-G solvation = -33.673056 kcal Electronic energy + Delta-G solvation = -18273.402534 eV Core-core repulsion = 15169.121524 eV Total energy + Delta-G solvation = -3104.281010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.49801 -40.14238 -39.64030 -35.89595 -35.06686 -34.60492 -34.01894 -31.11020 -30.48766 -28.37013 -25.94087 -23.79208 -22.76560 -21.30045 -21.13446 -19.29402 -18.66593 -17.73192 -17.70456 -17.32975 -17.04339 -16.43758 -15.76053 -15.59953 -15.16697 -15.01475 -14.71089 -14.46232 -13.92702 -13.42061 -13.22068 -12.93360 -12.83425 -12.71308 -12.37030 -12.01438 -11.83132 -11.54220 -11.39042 -10.92806 -10.71311 -10.06813 -9.89268 -8.66631 -8.39866 -7.00070 0.52127 1.21819 1.40126 1.42654 1.56809 1.59833 2.22874 2.28126 2.52552 2.54071 3.06354 3.49218 3.65697 4.03460 4.06948 4.09498 4.37000 4.39706 4.77149 4.86373 4.94408 5.09561 5.23230 5.27544 5.81720 5.87925 5.98442 6.12260 6.35715 6.38049 6.74093 6.94599 7.31854 7.40398 8.36025 8.54898 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.006410 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.126243 B = 4366.900935 C = 5461.157569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.107 3.893 3 N -0.259 5.259 4 C -0.075 4.075 5 C 0.090 3.910 6 N -0.665 5.665 7 C 0.531 3.469 8 O -0.606 6.606 9 C -0.566 4.566 10 H 0.081 0.919 11 C 0.037 3.963 12 N -0.796 5.796 13 Si 1.001 2.999 14 H -0.253 1.253 15 H -0.263 1.263 16 H -0.263 1.263 17 C -0.091 4.091 18 C 0.613 3.387 19 N -0.815 5.815 20 O -0.580 6.580 21 N -0.230 5.230 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.046 0.954 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.184 0.816 28 H 0.406 0.594 29 H 0.281 0.719 30 H 0.418 0.582 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -4.241 -10.606 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.053 5.053 4 C -0.220 4.220 5 C -0.018 4.018 6 N -0.308 5.308 7 C 0.340 3.660 8 O -0.493 6.493 9 C -0.601 4.601 10 H 0.099 0.901 11 C -0.182 4.182 12 N -0.424 5.424 13 Si 0.819 3.181 14 H -0.176 1.176 15 H -0.187 1.187 16 H -0.187 1.187 17 C -0.250 4.250 18 C 0.397 3.603 19 N -0.380 5.380 20 O -0.459 6.459 21 N -0.071 5.071 22 H 0.088 0.912 23 H 0.128 0.872 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.201 0.799 28 H 0.242 0.758 29 H 0.091 0.909 30 H 0.249 0.751 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.207 -5.206 -10.529 15.561 hybrid contribution 0.880 1.134 0.640 1.572 sum -9.327 -4.072 -9.889 14.191 Atomic orbital electron populations 1.22053 0.91751 1.04894 1.02784 1.22459 0.97542 0.74574 1.06533 1.45825 1.31115 1.11194 1.17185 1.23115 1.03070 0.94902 1.00896 1.18327 0.97113 0.91540 0.94847 1.43337 1.45630 1.13105 1.28777 1.17396 0.80634 0.88852 0.79120 1.90441 1.68948 1.22513 1.67439 1.20537 1.28193 0.98884 1.12499 0.90067 1.26939 0.96871 0.97767 0.96620 1.70122 1.33340 1.19793 1.19189 0.84926 0.77214 0.78023 0.77893 1.17610 1.18722 1.18723 1.21494 1.07565 0.95210 1.00729 1.16762 0.78651 0.84481 0.80366 1.43272 1.47909 1.18567 1.28217 1.90766 1.48359 1.36732 1.70001 1.73034 1.21284 0.96951 1.15791 0.91194 0.87167 0.93451 0.86617 0.86844 0.79939 0.75814 0.90883 0.75058 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.02 71.98 0.72 -1.82 16 2 C 0.11 2.20 7.12 86.38 0.61 2.82 16 3 N -0.26 -8.54 3.42 -346.58 -1.19 -9.73 16 4 C -0.07 -3.28 10.31 83.65 0.86 -2.42 16 5 C 0.09 4.28 6.99 38.37 0.27 4.55 16 6 N -0.66 -35.44 5.41 -310.90 -1.68 -37.12 16 7 C 0.53 32.22 7.54 85.12 0.64 32.86 16 8 O -0.61 -39.36 12.15 -4.61 -0.06 -39.42 16 9 C -0.57 -33.29 9.31 23.61 0.22 -33.07 16 10 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 11 C 0.04 2.03 5.50 85.33 0.47 2.50 16 12 N -0.80 -47.25 11.73 21.85 0.26 -46.99 16 13 Si 1.00 40.95 29.56 68.60 2.03 42.98 16 14 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 C -0.09 -3.57 7.14 42.52 0.30 -3.26 16 18 C 0.61 21.76 8.09 86.69 0.70 22.46 16 19 N -0.82 -18.41 8.87 -175.84 -1.56 -19.97 16 20 O -0.58 -24.70 16.20 -3.99 -0.06 -24.77 16 21 N -0.23 -7.59 11.34 -47.98 -0.54 -8.13 16 22 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 23 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16 27 H 0.18 8.97 6.01 -2.91 -0.02 8.95 16 28 H 0.41 20.90 7.10 -92.71 -0.66 20.24 16 29 H 0.28 14.84 8.29 -92.71 -0.77 14.07 16 30 H 0.42 7.43 8.55 -92.71 -0.79 6.63 16 31 H 0.42 7.28 8.93 -92.71 -0.83 6.45 16 Total: -1.00 -79.86 279.30 0.93 -78.93 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -1.06 Total: 39.61 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 4.80 Total: 24.61 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.72 Total: -121.95 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -0.12 Total: -64.19 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -79.86 0.93 -78.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649199384.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.260 kcal (2) G-P(sol) polarization free energy of solvation -79.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds