Wall clock time and date at job start Sun Mar 29 2020 23:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.50697 * 109.47143 * 70.64193 * 13 12 11 15 15 C 1.38638 * 120.80229 * 259.72058 * 14 13 12 16 16 C 1.38185 * 119.19233 * 179.79902 * 15 14 13 17 17 N 1.31872 * 120.82299 * 0.48282 * 16 15 14 18 18 C 1.31839 * 121.75278 * 359.74304 * 17 16 15 19 19 C 1.38465 * 120.72154 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.44414 * 179.97438 * 19 18 17 21 21 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 24 24 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 25 25 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 26 26 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 27 27 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 28 28 H 1.07997 * 120.40258 * 0.02562 * 15 14 13 29 29 H 1.08006 * 119.58886 * 180.20664 * 16 15 14 30 30 H 1.07998 * 119.63992 * 179.97438 * 18 17 16 31 31 H 1.08996 * 113.76309 * 220.98440 * 21 12 11 32 32 H 1.09008 * 113.85816 * 89.63955 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1157 -2.3712 -3.1720 15 6 5.4841 -1.9029 -4.3139 16 6 6.2381 -1.2971 -5.3008 17 7 7.5443 -1.1700 -5.1710 18 6 8.1810 -1.6066 -4.1023 19 6 7.4920 -2.2202 -3.0698 20 9 8.1502 -2.6660 -1.9775 21 6 4.1311 -2.6032 -0.0006 22 1 -0.4850 0.8401 0.0004 23 1 3.7022 0.5733 0.9700 24 1 3.4728 -1.3367 -2.2108 25 1 4.5846 -0.0508 -1.5657 26 1 5.8876 -3.8865 -1.6868 27 1 4.3704 -3.3746 -2.4642 28 1 4.4154 -2.0070 -4.4290 29 1 5.7522 -0.9269 -6.1915 30 1 9.2518 -1.4852 -4.0318 31 1 4.5837 -2.8845 0.9502 32 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653390663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:27 Heat of formation + Delta-G solvation = -28.990566 kcal Electronic energy + Delta-G solvation = -18557.555741 eV Core-core repulsion = 15433.557818 eV Total energy + Delta-G solvation = -3123.997923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.94629 -41.47341 -40.63671 -36.96964 -34.56255 -34.32826 -31.88255 -30.37554 -27.94680 -27.12852 -24.85835 -24.52209 -22.59198 -20.91935 -19.39765 -18.52608 -18.38279 -18.05284 -17.47629 -17.17533 -16.63350 -16.12734 -15.46087 -15.22776 -15.14842 -14.78918 -14.61973 -14.46283 -14.39508 -13.88705 -13.46804 -13.18672 -12.78141 -12.71521 -12.44184 -12.26351 -11.92576 -11.28356 -11.02910 -10.68687 -10.66340 -10.44735 -9.96131 -9.72818 -8.45875 -6.55371 -0.07841 -0.01328 1.20356 1.25618 1.34522 2.14148 2.56008 2.77097 2.97485 3.05636 3.33370 3.50136 3.55473 3.72088 3.87606 3.96624 4.08971 4.24702 4.41204 4.44303 4.59910 4.73442 4.74568 4.84666 4.87047 5.01473 5.08362 5.29471 5.32277 5.60696 6.00394 6.09386 6.49986 6.73486 6.77200 7.12548 8.69725 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.006645 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.935631 B = 4212.704448 C = 4515.686874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.028 3.972 3 Si 0.917 3.083 4 H -0.258 1.258 5 H -0.239 1.239 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.182 3.818 10 O -0.560 6.560 11 C -0.014 4.014 12 N -0.475 5.475 13 C 0.055 3.945 14 C -0.076 4.076 15 C -0.139 4.139 16 C 0.089 3.911 17 N -0.477 5.477 18 C 0.069 3.931 19 C 0.049 3.951 20 F -0.133 7.133 21 C 0.031 3.969 22 H 0.272 0.728 23 H 0.350 0.650 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.160 0.840 29 H 0.194 0.806 30 H 0.187 0.813 31 H 0.086 0.914 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 -3.015 -9.740 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.173 4.173 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.164 1.164 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.141 3.859 10 O -0.371 6.371 11 C -0.143 4.143 12 N -0.198 5.198 13 C -0.073 4.073 14 C -0.085 4.085 15 C -0.159 4.159 16 C -0.067 4.067 17 N -0.186 5.186 18 C -0.089 4.089 19 C 0.027 3.973 20 F -0.112 7.112 21 C -0.097 4.097 22 H 0.082 0.918 23 H 0.202 0.798 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.177 0.823 29 H 0.211 0.789 30 H 0.204 0.796 31 H 0.105 0.895 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.577 -2.902 -10.024 17.124 hybrid contribution -1.617 0.388 0.713 1.809 sum 11.960 -2.514 -9.311 15.364 Atomic orbital electron populations 1.70000 1.07811 1.28607 1.49940 1.25770 0.95568 1.02696 0.93250 0.86355 0.79799 0.79753 0.79840 1.18356 1.16355 1.20823 1.21554 0.90352 0.94257 1.52000 0.92798 1.20660 0.90371 0.89425 0.85402 1.86466 1.67373 1.24298 1.58926 1.24815 0.93371 0.96451 0.99706 1.68634 1.33559 1.08353 1.09231 1.21607 0.99461 0.95605 0.90645 1.20482 0.92554 0.98724 0.96768 1.22345 1.02886 0.97835 0.92803 1.23310 0.88995 0.94902 0.99526 1.67772 1.11456 1.16762 1.22587 1.23193 1.02118 0.95328 0.88273 1.18857 0.90966 1.01377 0.86117 1.91497 1.80589 1.86982 1.52116 1.23999 0.92649 0.95857 0.97217 0.91841 0.79840 0.90042 0.91497 0.88782 0.91137 0.82256 0.78900 0.79636 0.89548 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.96 21.45 0.30 -53.62 16 2 C 0.03 1.51 5.47 84.66 0.46 1.98 16 3 Si 0.92 40.39 24.34 68.60 1.67 42.06 16 4 H -0.26 -10.91 7.06 99.48 0.70 -10.20 16 5 H -0.24 -9.87 5.27 99.48 0.52 -9.35 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -29.21 9.20 25.60 0.24 -28.98 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 9 C 0.18 8.39 1.05 -10.89 -0.01 8.38 16 10 O -0.56 -26.91 13.32 -148.98 -1.98 -28.89 16 11 C -0.01 -0.56 5.94 86.41 0.51 -0.05 16 12 N -0.48 -17.43 6.25 -915.39 -5.72 -23.15 16 13 C 0.05 1.59 4.76 85.56 0.41 1.99 16 14 C -0.08 -2.06 4.99 -19.63 -0.10 -2.16 16 15 C -0.14 -3.13 9.64 22.35 0.22 -2.92 16 16 C 0.09 1.84 11.18 84.67 0.95 2.79 16 17 N -0.48 -11.39 10.36 -195.67 -2.03 -13.42 16 18 C 0.07 1.62 11.17 84.75 0.95 2.57 16 19 C 0.05 1.33 7.29 22.47 0.16 1.49 16 20 F -0.13 -3.92 16.80 44.97 0.76 -3.16 16 21 C 0.03 1.22 7.36 86.41 0.64 1.85 16 22 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.35 15.98 3.32 -74.06 -0.25 15.74 16 24 H 0.08 3.08 7.73 -2.39 -0.02 3.07 16 25 H 0.07 2.74 6.97 -2.38 -0.02 2.72 16 26 H 0.09 2.57 8.02 -2.38 -0.02 2.55 16 27 H 0.07 1.89 7.59 -2.39 -0.02 1.87 16 28 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 3.19 7.75 -2.38 -0.02 3.17 16 Total: -1.00 -63.89 272.59 -1.88 -65.77 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.71 Total: 27.48 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.42 Total: -13.06 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -7.45 Total: -90.19 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.98 Total: -28.89 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.76 Total: -3.16 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.67 Total: 42.06 kcal Total: -63.89 -1.88 -65.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653390663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds