Wall clock time and date at job start Sun Mar 29 2020 23:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39878 * 119.73749 * 2 1 4 4 C 1.30375 * 121.00709 * 179.97438 * 3 2 1 5 5 C 1.41077 * 120.41929 * 0.02562 * 4 3 2 6 6 N 1.38854 * 120.28571 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99788 * 302.46661 * 6 5 4 8 8 O 1.21571 * 119.99582 * 4.80826 * 7 6 5 9 9 N 1.34768 * 120.00053 * 184.80195 * 7 6 5 10 10 C 1.46504 * 120.00136 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00012 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00044 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46982 * 90.00057 * 15 13 11 17 17 H 1.48500 * 109.46965 * 209.99953 * 15 13 11 18 18 H 1.48494 * 109.46860 * 329.99526 * 15 13 11 19 19 C 1.38119 * 119.42794 * 359.97438 * 5 4 3 20 20 C 1.34762 * 119.73071 * 179.97438 * 2 1 3 21 21 O 1.22127 * 120.21630 * 0.02562 * 20 2 1 22 22 H 1.09006 * 109.47287 * 270.00695 * 1 2 3 23 23 H 1.09006 * 109.46702 * 30.00479 * 1 2 3 24 24 H 1.08993 * 109.47313 * 150.00491 * 1 2 3 25 25 H 1.07994 * 119.78569 * 180.27025 * 4 3 2 26 26 H 0.96999 * 120.00511 * 122.46814 * 6 5 4 27 27 H 0.97005 * 119.99988 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.46766 * 299.99978 * 10 9 7 29 29 H 1.08999 * 109.47254 * 59.99984 * 10 9 7 30 30 H 0.96998 * 119.99791 * 180.02562 * 14 13 11 31 31 H 1.08007 * 120.47916 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1589 1.2146 0.0000 4 6 3.4623 1.2435 0.0005 5 6 4.2034 0.0430 0.0005 6 7 5.5915 0.0770 0.0016 7 6 6.2506 0.7204 -0.9825 8 8 5.6310 1.3444 -1.8219 9 7 7.5963 0.6721 -1.0357 10 6 8.3128 1.3718 -2.1050 11 6 9.7955 1.1606 -1.9380 12 1 10.1670 0.5644 -1.1178 13 6 10.6777 1.7276 -2.8331 14 7 11.9717 1.5437 -2.6872 15 14 10.0350 2.7584 -4.2523 16 1 9.9386 4.1784 -3.8289 17 1 10.9644 2.6475 -5.4052 18 1 8.6911 2.2683 -4.6511 19 6 3.5362 -1.1664 0.0005 20 6 2.1333 -1.1702 0.0005 21 8 1.5217 -2.2273 0.0005 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5137 25 1 3.9779 2.1924 0.0049 26 1 6.0869 -0.3622 0.7104 27 1 8.0906 0.1739 -0.3660 28 1 7.9967 0.9792 -3.0714 29 1 8.0893 2.4375 -2.0551 30 1 12.5923 1.9430 -3.3167 31 1 4.0866 -2.0957 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673423590.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:13 Heat of formation + Delta-G solvation = 9.672852 kcal Electronic energy + Delta-G solvation = -17661.204817 eV Core-core repulsion = 14558.803427 eV Total energy + Delta-G solvation = -3102.401390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26726 -39.85692 -37.46165 -35.82477 -34.47131 -33.22447 -32.39929 -31.04751 -28.34037 -27.18520 -24.54795 -23.57834 -22.01792 -20.78073 -18.97201 -18.05521 -17.83054 -17.64091 -16.52335 -16.15066 -15.63966 -15.01049 -14.78325 -14.40189 -13.94965 -13.62704 -13.41506 -13.34122 -12.89573 -12.66502 -12.50637 -12.43858 -11.59281 -11.11167 -10.87170 -10.64239 -10.20201 -10.06647 -9.92317 -9.58640 -9.28110 -8.88526 -8.79206 -8.32031 -6.29308 -4.32847 0.14978 1.59639 1.96561 2.67916 3.14555 3.21615 3.29453 3.36150 3.40149 3.99928 4.24793 4.26960 4.62224 4.79622 5.06055 5.08772 5.10415 5.29664 5.40086 5.52652 5.75831 5.85649 6.41215 6.47116 6.91996 6.96344 7.07828 7.29695 7.42041 7.72865 8.09334 8.39068 8.66295 8.80496 9.29523 10.82396 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.049985 B = 0.004083 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.033074 B = 6855.745666 C = 7116.911944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.420 5.420 3 N -0.214 5.214 4 C 0.098 3.902 5 C 0.218 3.782 6 N -0.699 5.699 7 C 0.695 3.305 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.236 3.764 11 C -0.547 4.547 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.877 3.123 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.206 4.206 20 C 0.511 3.489 21 O -0.547 6.547 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.197 0.803 26 H 0.413 0.587 27 H 0.397 0.603 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.269 0.731 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.704 -1.632 7.934 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.240 5.240 3 N -0.027 5.027 4 C -0.103 4.103 5 C 0.115 3.885 6 N -0.353 5.353 7 C 0.395 3.605 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.114 3.886 11 C -0.585 4.585 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.527 5.527 15 Si 0.703 3.297 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.238 4.238 20 C 0.307 3.693 21 O -0.426 6.426 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.213 0.787 26 H 0.251 0.749 27 H 0.231 0.769 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.193 -1.061 7.010 19.525 hybrid contribution 1.146 -0.443 -0.103 1.233 sum -17.047 -1.504 6.906 18.454 Atomic orbital electron populations 1.21828 0.74780 1.04567 1.03357 1.49613 1.08542 1.02550 1.63325 1.75262 1.09333 1.06548 1.11532 1.24212 0.89084 0.99911 0.97071 1.18500 0.84362 0.92932 0.92696 1.42581 1.03407 1.60022 1.29291 1.16085 0.83083 0.80024 0.81287 1.90942 1.67177 1.46876 1.41039 1.45459 1.02844 1.54840 1.32907 1.19489 0.91773 0.91976 0.85333 1.21038 0.87998 1.34796 1.14675 0.90157 1.24773 0.94611 0.95626 0.97493 1.69871 1.01540 1.44050 1.37225 0.86821 0.79655 0.81145 0.82104 1.19745 1.20834 1.18440 1.22936 0.93535 0.99296 1.08070 1.17156 0.88763 0.83860 0.79519 1.90990 1.69782 1.28985 1.52871 0.91009 0.89401 0.88922 0.78665 0.74893 0.76919 0.95514 0.95867 0.92125 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 10.72 59.85 0.64 1.50 16 2 N -0.42 -5.23 3.91 -70.38 -0.27 -5.51 16 3 N -0.21 -2.63 11.53 30.80 0.36 -2.27 16 4 C 0.10 1.18 10.14 -17.09 -0.17 1.00 16 5 C 0.22 2.65 5.81 -83.65 -0.49 2.17 16 6 N -0.70 -8.28 5.25 -14.13 -0.07 -8.36 16 7 C 0.69 11.67 8.41 -86.92 -0.73 10.94 16 8 O -0.58 -11.99 15.41 5.30 0.08 -11.91 16 9 N -0.71 -12.71 5.55 -66.42 -0.37 -13.08 16 10 C 0.24 5.38 4.50 -5.19 -0.02 5.36 16 11 C -0.55 -14.16 9.83 -34.44 -0.34 -14.50 16 12 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -25.53 13.96 55.43 0.77 -24.75 16 15 Si 0.88 20.53 27.47 -169.99 -4.67 15.87 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 19 C -0.21 -2.54 9.97 -38.85 -0.39 -2.93 16 20 C 0.51 7.17 7.48 -15.49 -0.12 7.06 16 21 O -0.55 -9.04 16.69 4.80 0.08 -8.96 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.85 7.41 -51.93 -0.38 0.46 16 25 H 0.20 2.15 7.90 -52.49 -0.41 1.74 16 26 H 0.41 3.44 8.84 -40.82 -0.36 3.08 16 27 H 0.40 6.04 8.34 -40.82 -0.34 5.70 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -33.39 280.61 -4.69 -38.09 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.11 Total: 4.01 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -1.71 Total: 12.65 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.41 Total: -53.97 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.16 Total: -20.87 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.39 -4.69 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673423590.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.761 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds