Wall clock time and date at job start Sun Mar 29 2020 23:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39878 * 119.73749 * 2 1 4 4 C 1.30375 * 121.00709 * 179.97438 * 3 2 1 5 5 C 1.41077 * 120.41929 * 0.02562 * 4 3 2 6 6 N 1.38854 * 120.28571 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99788 * 302.46661 * 6 5 4 8 8 O 1.21571 * 119.99582 * 4.80826 * 7 6 5 9 9 N 1.34768 * 120.00053 * 184.80195 * 7 6 5 10 10 C 1.46504 * 120.00136 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00012 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00044 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46982 * 90.00057 * 15 13 11 17 17 H 1.48500 * 109.46965 * 209.99953 * 15 13 11 18 18 H 1.48494 * 109.46860 * 329.99526 * 15 13 11 19 19 C 1.38119 * 119.42794 * 359.97438 * 5 4 3 20 20 C 1.34762 * 119.73071 * 179.97438 * 2 1 3 21 21 O 1.22127 * 120.21630 * 0.02562 * 20 2 1 22 22 H 1.09006 * 109.47287 * 270.00695 * 1 2 3 23 23 H 1.09006 * 109.46702 * 30.00479 * 1 2 3 24 24 H 1.08993 * 109.47313 * 150.00491 * 1 2 3 25 25 H 1.07994 * 119.78569 * 180.27025 * 4 3 2 26 26 H 0.96999 * 120.00511 * 122.46814 * 6 5 4 27 27 H 0.97005 * 119.99988 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.46766 * 299.99978 * 10 9 7 29 29 H 1.08999 * 109.47254 * 59.99984 * 10 9 7 30 30 H 0.96998 * 119.99791 * 180.02562 * 14 13 11 31 31 H 1.08007 * 120.47916 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1589 1.2146 0.0000 4 6 3.4623 1.2435 0.0005 5 6 4.2034 0.0430 0.0005 6 7 5.5915 0.0770 0.0016 7 6 6.2506 0.7204 -0.9825 8 8 5.6310 1.3444 -1.8219 9 7 7.5963 0.6721 -1.0357 10 6 8.3128 1.3718 -2.1050 11 6 9.7955 1.1606 -1.9380 12 1 10.1670 0.5644 -1.1178 13 6 10.6777 1.7276 -2.8331 14 7 11.9717 1.5437 -2.6872 15 14 10.0350 2.7584 -4.2523 16 1 9.9386 4.1784 -3.8289 17 1 10.9644 2.6475 -5.4052 18 1 8.6911 2.2683 -4.6511 19 6 3.5362 -1.1664 0.0005 20 6 2.1333 -1.1702 0.0005 21 8 1.5217 -2.2273 0.0005 22 1 -0.3634 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5137 25 1 3.9779 2.1924 0.0049 26 1 6.0869 -0.3622 0.7104 27 1 8.0906 0.1739 -0.3660 28 1 7.9967 0.9792 -3.0714 29 1 8.0893 2.4375 -2.0551 30 1 12.5923 1.9430 -3.3167 31 1 4.0866 -2.0957 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673423590.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:13 Heat of formation + Delta-G solvation = -17.162860 kcal Electronic energy + Delta-G solvation = -17662.368501 eV Core-core repulsion = 14558.803427 eV Total energy + Delta-G solvation = -3103.565074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.32369 -41.13474 -38.58894 -36.98630 -36.09332 -34.57366 -33.97493 -32.14188 -29.96979 -28.25415 -25.52429 -24.91300 -23.56189 -22.13869 -20.34984 -19.19128 -18.97751 -18.59695 -18.31502 -17.16009 -16.90557 -16.47121 -16.31120 -15.92485 -15.05938 -14.94914 -14.56767 -14.43891 -14.31349 -14.25140 -13.68361 -13.44453 -13.02581 -12.72631 -12.59552 -11.91449 -11.78039 -11.61509 -11.44704 -11.14747 -10.88750 -10.40093 -9.93491 -9.75051 -8.36402 -6.43443 -0.84691 0.57262 1.04811 1.37469 1.39421 1.49279 1.52296 1.93606 2.25581 2.31792 2.99923 3.03254 3.15644 3.47451 3.83149 4.22507 4.42148 4.44917 4.59194 4.73543 4.76927 4.84144 4.91706 5.08471 5.26587 5.34508 5.45109 5.79149 6.19176 6.41596 6.59260 6.70867 7.01137 7.20646 7.45689 8.78133 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.049985 B = 0.004083 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.033074 B = 6855.745666 C = 7116.911944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.420 5.420 3 N -0.215 5.215 4 C 0.095 3.905 5 C 0.216 3.784 6 N -0.675 5.675 7 C 0.703 3.297 8 O -0.618 6.618 9 N -0.708 5.708 10 C 0.249 3.751 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.026 3.974 14 N -0.933 5.933 15 Si 0.936 3.064 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.257 1.257 19 C -0.200 4.200 20 C 0.501 3.499 21 O -0.580 6.580 22 H 0.089 0.911 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.207 0.793 26 H 0.433 0.567 27 H 0.411 0.589 28 H 0.015 0.985 29 H 0.020 0.980 30 H 0.272 0.728 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 -1.194 8.162 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.239 5.239 3 N -0.028 5.028 4 C -0.105 4.105 5 C 0.114 3.886 6 N -0.330 5.330 7 C 0.403 3.597 8 O -0.498 6.498 9 N -0.361 5.361 10 C 0.125 3.875 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.174 4.174 14 N -0.571 5.571 15 Si 0.760 3.240 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.233 4.233 20 C 0.298 3.702 21 O -0.462 6.462 22 H 0.107 0.893 23 H 0.125 0.875 24 H 0.108 0.892 25 H 0.223 0.777 26 H 0.274 0.726 27 H 0.247 0.753 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.404 -0.635 7.300 20.742 hybrid contribution 1.455 -0.610 -0.089 1.580 sum -17.950 -1.245 7.212 19.384 Atomic orbital electron populations 1.22103 0.73011 1.05340 1.04790 1.49862 1.09794 1.02228 1.62021 1.75320 1.09463 1.06234 1.11801 1.24416 0.89149 1.00350 0.96589 1.18471 0.84096 0.93000 0.93075 1.42141 1.03315 1.58947 1.28551 1.16010 0.82426 0.79717 0.81533 1.90925 1.67739 1.48427 1.42716 1.45090 1.03476 1.55045 1.32439 1.19062 0.90160 0.92129 0.86195 1.21278 0.89736 1.33610 1.13690 0.92028 1.25572 0.94751 0.96969 1.00101 1.69981 1.02814 1.45726 1.38627 0.85880 0.79071 0.79889 0.79197 1.18829 1.20433 1.18108 1.23032 0.93050 0.99984 1.07202 1.17397 0.89356 0.83902 0.79545 1.90974 1.70436 1.30031 1.54728 0.89259 0.87531 0.89249 0.77674 0.72554 0.75329 0.96756 0.96216 0.91928 0.80421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.72 127.77 1.37 2.80 16 2 N -0.42 -9.77 3.91 -494.61 -1.93 -11.70 16 3 N -0.21 -4.87 11.53 -56.46 -0.65 -5.52 16 4 C 0.09 2.09 10.14 85.61 0.87 2.96 16 5 C 0.22 4.78 5.81 38.70 0.22 5.01 16 6 N -0.67 -14.30 5.25 -316.87 -1.66 -15.96 16 7 C 0.70 22.17 8.41 179.05 1.51 23.68 16 8 O -0.62 -24.35 15.41 -3.94 -0.06 -24.41 16 9 N -0.71 -24.21 5.55 -482.32 -2.68 -26.89 16 10 C 0.25 11.03 4.50 85.63 0.38 11.42 16 11 C -0.55 -28.05 9.83 25.60 0.25 -27.80 16 12 H 0.06 3.33 7.84 -2.91 -0.02 3.30 16 13 C 0.03 1.42 5.47 84.65 0.46 1.88 16 14 N -0.93 -53.80 13.96 21.45 0.30 -53.50 16 15 Si 0.94 41.86 27.47 68.60 1.88 43.74 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.26 -11.28 6.54 99.48 0.65 -10.63 16 19 C -0.20 -4.56 9.97 22.74 0.23 -4.33 16 20 C 0.50 13.41 7.48 84.74 0.63 14.04 16 21 O -0.58 -18.73 16.69 -5.73 -0.10 -18.83 16 22 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.09 1.54 7.41 -2.39 -0.02 1.52 16 25 H 0.21 4.09 7.90 -2.91 -0.02 4.07 16 26 H 0.43 5.93 8.84 -92.71 -0.82 5.11 16 27 H 0.41 11.78 8.34 -92.70 -0.77 11.00 16 28 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 29 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -70.49 280.61 0.57 -69.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.46 Total: 13.52 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 5.93 Total: 29.64 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -6.63 Total: -113.58 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.16 Total: -43.23 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.74 kcal Total: -70.49 0.57 -69.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673423590.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.753 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds