Wall clock time and date at job start Sun Mar 29 2020 23:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.81986 * 2 1 4 4 N 1.29948 * 126.28426 * 120.59337 * 3 2 1 5 5 O 1.21304 * 110.25050 * 179.68806 * 4 3 2 6 6 C 1.33645 * 109.80925 * 0.46749 * 5 4 3 7 7 C 1.50696 * 126.55008 * 179.80532 * 6 5 4 8 8 C 1.52998 * 109.46973 * 269.68740 * 7 6 5 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 N 1.31128 * 106.89649 * 359.53814 * 6 5 4 18 18 C 1.54375 * 109.91044 * 120.93632 * 2 1 3 19 19 C 1.55303 * 102.25472 * 98.19929 * 18 2 1 20 20 C 1.54950 * 100.94071 * 34.13622 * 19 18 2 21 21 O 1.43237 * 109.83257 * 239.12198 * 2 1 3 22 22 H 1.08992 * 109.47040 * 59.29896 * 1 2 3 23 23 H 1.09002 * 109.46549 * 179.29342 * 1 2 3 24 24 H 1.08998 * 109.47076 * 299.29176 * 1 2 3 25 25 H 1.09000 * 109.47333 * 149.68870 * 7 6 5 26 26 H 1.09002 * 109.47152 * 29.68342 * 7 6 5 27 27 H 1.09001 * 109.47671 * 60.00215 * 8 7 6 28 28 H 1.09006 * 109.47297 * 299.99934 * 8 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 30 30 H 1.09000 * 110.85453 * 216.39411 * 18 2 1 31 31 H 1.09007 * 110.84470 * 340.01049 * 18 2 1 32 32 H 1.08997 * 111.12942 * 276.22141 * 19 18 2 33 33 H 1.09002 * 111.16446 * 152.06803 * 19 18 2 34 34 H 1.08991 * 110.31254 * 204.64062 * 20 19 18 35 35 H 1.09003 * 110.30906 * 82.46525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 7 2.8033 1.9604 0.9017 5 8 3.0432 3.1132 0.6101 6 6 2.4301 3.4278 -0.5349 7 6 2.4695 4.7605 -1.2374 8 6 1.3148 5.6329 -0.7412 9 6 1.3538 6.9654 -1.4441 10 1 2.1254 7.1697 -2.1717 11 6 0.4046 7.9236 -1.1584 12 7 -0.5347 7.6750 -0.2721 13 14 0.4535 9.5755 -2.0292 14 1 -0.6682 10.4218 -1.5486 15 1 1.7437 10.2506 -1.7380 16 1 0.3233 9.3671 -3.4938 17 7 1.7923 2.3536 -0.9334 18 6 2.0558 -0.7462 1.2450 19 6 2.3715 -2.1561 0.6754 20 6 2.8426 -1.7961 -0.7562 21 8 2.0160 -0.6915 -1.1564 22 1 -0.3633 0.5246 -0.8836 23 1 -0.3632 -1.0276 -0.0127 24 1 -0.3633 0.5028 0.8962 25 1 2.3735 4.6076 -2.3123 26 1 3.4168 5.2558 -1.0240 27 1 1.4107 5.7859 0.3337 28 1 0.3674 5.1376 -0.9546 29 1 -0.5599 6.8174 0.1804 30 1 2.9588 -0.2718 1.6291 31 1 1.2877 -0.8026 2.0165 32 1 1.4773 -2.7787 0.6497 33 1 3.1680 -2.6397 1.2410 34 1 2.6944 -2.6421 -1.4272 35 1 3.8914 -1.4995 -0.7460 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235436856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:06 Heat of formation + Delta-G solvation = 4.188810 kcal Electronic energy + Delta-G solvation = -18451.592831 eV Core-core repulsion = 15452.493978 eV Total energy + Delta-G solvation = -2999.098853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.22317 -39.97421 -35.63212 -34.73005 -33.10507 -32.29191 -31.37359 -29.98862 -26.46388 -25.35198 -24.29649 -22.83292 -22.01839 -21.57748 -19.92428 -17.83258 -17.30856 -16.75096 -16.53299 -16.06128 -15.34219 -14.49583 -13.82355 -13.74766 -13.62205 -13.43226 -12.91858 -12.56151 -12.46649 -12.24618 -12.00988 -11.82363 -11.51411 -11.34504 -11.14804 -11.04841 -10.89104 -10.60524 -10.48541 -10.26162 -10.10726 -9.96664 -9.44359 -8.69333 -8.40542 -6.44150 -4.15671 1.48121 2.50389 3.24334 3.42276 3.43366 3.44358 3.63004 3.71542 4.16309 4.48391 4.49529 4.54140 4.69122 4.85303 4.98798 5.32640 5.34071 5.37022 5.43886 5.48049 5.52839 5.64288 5.67853 5.81698 5.89492 6.01351 6.09102 6.13756 6.34949 6.49476 6.78408 7.17928 7.28353 8.02167 8.35338 8.49587 8.76901 9.57194 10.96473 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.049377 B = 0.004151 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.925462 B = 6743.863735 C = 6831.924106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.203 3.797 3 C 0.159 3.841 4 N -0.390 5.390 5 O 0.070 5.930 6 C 0.208 3.792 7 C -0.020 4.020 8 C 0.015 3.985 9 C -0.606 4.606 10 H 0.055 0.945 11 C 0.018 3.982 12 N -0.908 5.908 13 Si 1.072 2.928 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.286 1.286 17 N -0.478 5.478 18 C -0.145 4.145 19 C -0.153 4.153 20 C 0.046 3.954 21 O -0.356 6.356 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.014 0.986 28 H 0.018 0.982 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -17.790 1.866 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 C -0.115 4.115 4 N -0.102 5.102 5 O 0.012 5.988 6 C -0.011 4.011 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.644 4.644 10 H 0.074 0.926 11 C -0.186 4.186 12 N -0.543 5.543 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.213 1.213 17 N -0.211 5.211 18 C -0.183 4.183 19 C -0.191 4.191 20 C -0.031 4.031 21 O -0.274 6.274 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.944 -16.964 1.957 17.777 hybrid contribution 0.948 -1.393 0.290 1.710 sum 5.892 -18.357 2.247 19.410 Atomic orbital electron populations 1.22017 0.91458 1.03063 1.03879 1.20019 0.94653 0.82597 0.86539 1.25841 0.97389 0.99386 0.88879 1.74486 1.18997 0.93075 1.23642 1.85264 1.55398 1.21720 1.36382 1.29706 0.88226 0.98784 0.84379 1.20593 1.03682 0.82895 0.98786 1.19277 0.91789 0.94510 0.96749 1.21902 1.16512 0.99338 1.26684 0.92643 1.25892 0.92548 1.03766 0.96431 1.70787 1.33004 1.26046 1.24472 0.83504 0.76205 0.74812 0.75553 1.20739 1.21282 1.21286 1.71908 1.23190 0.99121 1.26895 1.23210 1.03322 0.94902 0.96856 1.23275 1.02553 0.97010 0.96252 1.23473 0.94817 0.89328 0.95457 1.88573 1.66798 1.43291 1.28710 0.90405 0.90919 0.91174 0.88008 0.88942 0.96728 0.96397 0.92067 0.89145 0.89059 0.89930 0.89520 0.89104 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.72 37.16 0.32 -1.57 16 2 C 0.20 2.94 1.23 -91.05 -0.11 2.83 16 3 C 0.16 2.88 6.82 -156.37 -1.07 1.81 16 4 N -0.39 -7.18 10.88 30.90 0.34 -6.85 16 5 O 0.07 1.33 11.31 18.09 0.20 1.54 16 6 C 0.21 4.12 7.77 -13.06 -0.10 4.02 16 7 C -0.02 -0.41 5.78 -27.89 -0.16 -0.57 16 8 C 0.01 0.37 4.27 -27.88 -0.12 0.25 16 9 C -0.61 -16.57 9.11 -34.44 -0.31 -16.88 16 10 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 11 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 12 N -0.91 -27.44 13.65 55.43 0.76 -26.69 16 13 Si 1.07 24.59 29.90 -169.99 -5.08 19.50 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 17 N -0.48 -9.68 11.55 -9.87 -0.11 -9.79 16 18 C -0.14 -1.62 5.97 -24.79 -0.15 -1.77 16 19 C -0.15 -1.29 7.16 -24.48 -0.18 -1.46 16 20 C 0.05 0.47 7.78 38.19 0.30 0.77 16 21 O -0.36 -5.27 10.66 -35.23 -0.38 -5.65 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 26 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 27 H 0.01 0.38 8.01 -51.93 -0.42 -0.04 16 28 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 29 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 30 H 0.09 1.12 7.03 -51.93 -0.36 0.76 16 31 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -31.82 298.43 -6.36 -38.17 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.90 Total: -2.58 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.67 Total: -12.16 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.98 Total: -43.32 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.17 Total: -4.11 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.82 -6.36 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235436856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.361 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds