Wall clock time and date at job start Sun Mar 29 2020 23:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.81986 * 2 1 4 4 N 1.29948 * 126.28426 * 120.59337 * 3 2 1 5 5 O 1.21304 * 110.25050 * 179.68806 * 4 3 2 6 6 C 1.33645 * 109.80925 * 0.46749 * 5 4 3 7 7 C 1.50696 * 126.55008 * 179.80532 * 6 5 4 8 8 C 1.52998 * 109.46973 * 269.68740 * 7 6 5 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 N 1.31128 * 106.89649 * 359.53814 * 6 5 4 18 18 C 1.54375 * 109.91044 * 120.93632 * 2 1 3 19 19 C 1.55303 * 102.25472 * 98.19929 * 18 2 1 20 20 C 1.54950 * 100.94071 * 34.13622 * 19 18 2 21 21 O 1.43237 * 109.83257 * 239.12198 * 2 1 3 22 22 H 1.08992 * 109.47040 * 59.29896 * 1 2 3 23 23 H 1.09002 * 109.46549 * 179.29342 * 1 2 3 24 24 H 1.08998 * 109.47076 * 299.29176 * 1 2 3 25 25 H 1.09000 * 109.47333 * 149.68870 * 7 6 5 26 26 H 1.09002 * 109.47152 * 29.68342 * 7 6 5 27 27 H 1.09001 * 109.47671 * 60.00215 * 8 7 6 28 28 H 1.09006 * 109.47297 * 299.99934 * 8 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 30 30 H 1.09000 * 110.85453 * 216.39411 * 18 2 1 31 31 H 1.09007 * 110.84470 * 340.01049 * 18 2 1 32 32 H 1.08997 * 111.12942 * 276.22141 * 19 18 2 33 33 H 1.09002 * 111.16446 * 152.06803 * 19 18 2 34 34 H 1.08991 * 110.31254 * 204.64062 * 20 19 18 35 35 H 1.09003 * 110.30906 * 82.46525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 7 2.8033 1.9604 0.9017 5 8 3.0432 3.1132 0.6101 6 6 2.4301 3.4278 -0.5349 7 6 2.4695 4.7605 -1.2374 8 6 1.3148 5.6329 -0.7412 9 6 1.3538 6.9654 -1.4441 10 1 2.1254 7.1697 -2.1717 11 6 0.4046 7.9236 -1.1584 12 7 -0.5347 7.6750 -0.2721 13 14 0.4535 9.5755 -2.0292 14 1 -0.6682 10.4218 -1.5486 15 1 1.7437 10.2506 -1.7380 16 1 0.3233 9.3671 -3.4938 17 7 1.7923 2.3536 -0.9334 18 6 2.0558 -0.7462 1.2450 19 6 2.3715 -2.1561 0.6754 20 6 2.8426 -1.7961 -0.7562 21 8 2.0160 -0.6915 -1.1564 22 1 -0.3633 0.5246 -0.8836 23 1 -0.3632 -1.0276 -0.0127 24 1 -0.3633 0.5028 0.8962 25 1 2.3735 4.6076 -2.3123 26 1 3.4168 5.2558 -1.0240 27 1 1.4107 5.7859 0.3337 28 1 0.3674 5.1376 -0.9546 29 1 -0.5599 6.8174 0.1804 30 1 2.9588 -0.2718 1.6291 31 1 1.2877 -0.8026 2.0165 32 1 1.4773 -2.7787 0.6497 33 1 3.1680 -2.6397 1.2410 34 1 2.6944 -2.6421 -1.4272 35 1 3.8914 -1.4995 -0.7460 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235436856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:06 Heat of formation + Delta-G solvation = -17.686763 kcal Electronic energy + Delta-G solvation = -18452.541427 eV Core-core repulsion = 15452.493978 eV Total energy + Delta-G solvation = -3000.047449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.71607 -40.94863 -37.19830 -36.47315 -34.71477 -33.48526 -32.44360 -31.66782 -27.60909 -27.12295 -25.58354 -24.59773 -23.23100 -22.84261 -21.19969 -19.41613 -18.79839 -18.64812 -17.52078 -17.11928 -16.37803 -16.22029 -15.60848 -15.36783 -14.74696 -14.42754 -14.37468 -14.02903 -13.75842 -13.58907 -13.46758 -12.87207 -12.85938 -12.67874 -12.40275 -12.35376 -12.27317 -12.09612 -12.06554 -11.88658 -11.74878 -11.09015 -10.94345 -10.72859 -10.54969 -8.69642 -6.42017 -0.04407 1.03118 1.58299 1.66824 1.70191 1.85332 2.31372 2.51495 2.61197 3.09709 3.16753 3.39793 3.61133 3.74393 3.99277 4.03184 4.21909 4.28621 4.32097 4.41231 4.47671 4.62881 4.67705 4.71405 4.75377 4.77929 4.87194 4.90908 5.03796 5.13338 5.15873 5.26114 5.83609 5.88609 6.15769 6.51254 6.98376 7.41042 8.71125 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.049377 B = 0.004151 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.925462 B = 6743.863735 C = 6831.924106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.193 3.807 3 C 0.157 3.843 4 N -0.392 5.392 5 O 0.063 5.937 6 C 0.203 3.797 7 C -0.007 4.007 8 C 0.019 3.981 9 C -0.616 4.616 10 H 0.069 0.931 11 C -0.038 4.038 12 N -0.938 5.938 13 Si 1.121 2.879 14 H -0.289 1.289 15 H -0.264 1.264 16 H -0.267 1.267 17 N -0.500 5.500 18 C -0.143 4.143 19 C -0.138 4.138 20 C 0.034 3.966 21 O -0.383 6.383 22 H 0.052 0.948 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.116 0.884 27 H -0.004 1.004 28 H -0.010 1.010 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -18.922 1.506 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.152 3.848 3 C -0.117 4.117 4 N -0.104 5.104 5 O 0.008 5.992 6 C -0.016 4.016 7 C -0.045 4.045 8 C -0.019 4.019 9 C -0.654 4.654 10 H 0.088 0.912 11 C -0.235 4.235 12 N -0.575 5.575 13 Si 0.942 3.058 14 H -0.214 1.214 15 H -0.189 1.189 16 H -0.192 1.192 17 N -0.234 5.234 18 C -0.181 4.181 19 C -0.175 4.175 20 C -0.041 4.041 21 O -0.301 6.301 22 H 0.071 0.929 23 H 0.123 0.877 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.014 0.986 28 H 0.008 0.992 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.840 -18.116 1.598 19.101 hybrid contribution 0.702 -1.138 0.407 1.397 sum 6.542 -19.253 2.005 20.433 Atomic orbital electron populations 1.22019 0.90650 1.04752 1.02676 1.20410 0.95304 0.80939 0.88163 1.26685 0.96444 1.00748 0.87801 1.74481 1.19395 0.92766 1.23790 1.85249 1.55553 1.22250 1.36136 1.29570 0.88615 0.98764 0.84687 1.20364 1.02665 0.82448 0.99058 1.19109 0.92532 0.94690 0.95581 1.22365 1.16434 1.00050 1.26518 0.91236 1.27504 0.91990 1.07704 0.96313 1.70928 1.34765 1.25477 1.26316 0.82890 0.76943 0.70592 0.75424 1.21427 1.18857 1.19201 1.71919 1.23512 0.99880 1.28082 1.23234 1.03001 0.96057 0.95843 1.23286 1.04180 0.95495 0.94566 1.23774 0.94079 0.88794 0.97500 1.88544 1.67489 1.44585 1.29505 0.92931 0.87716 0.91064 0.87091 0.86541 0.98574 0.99189 0.93759 0.90676 0.87353 0.87856 0.87232 0.86752 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.72 71.98 0.63 -2.96 16 2 C 0.19 5.41 1.23 -11.07 -0.01 5.40 16 3 C 0.16 5.71 6.82 138.46 0.94 6.65 16 4 N -0.39 -14.43 10.88 -60.30 -0.66 -15.08 16 5 O 0.06 2.44 11.31 74.81 0.85 3.28 16 6 C 0.20 8.11 7.77 88.38 0.69 8.80 16 7 C -0.01 -0.26 5.78 29.85 0.17 -0.09 16 8 C 0.02 0.97 4.27 29.85 0.13 1.10 16 9 C -0.62 -33.60 9.11 25.60 0.23 -33.37 16 10 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 11 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 12 N -0.94 -57.96 13.65 21.45 0.29 -57.67 16 13 Si 1.12 48.65 29.90 68.60 2.05 50.70 16 14 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 N -0.50 -20.53 11.55 -303.18 -3.50 -24.03 16 18 C -0.14 -2.92 5.97 31.85 0.19 -2.73 16 19 C -0.14 -1.86 7.16 32.05 0.23 -1.63 16 20 C 0.03 0.63 7.78 72.65 0.57 1.20 16 21 O -0.38 -10.93 10.66 -148.98 -1.59 -12.52 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 26 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 27 H 0.00 -0.22 8.01 -2.39 -0.02 -0.24 16 28 H -0.01 -0.57 8.01 -2.38 -0.02 -0.59 16 29 H 0.25 15.97 7.22 -92.71 -0.67 15.30 16 30 H 0.07 1.76 7.03 -2.39 -0.02 1.75 16 31 H 0.11 1.81 7.83 -2.38 -0.02 1.79 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.81 298.43 2.85 -66.97 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.18 Total: 7.65 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.22 Total: -19.30 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -3.87 Total: -96.78 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.74 Total: -9.23 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.05 Total: 50.70 kcal Total: -69.81 2.85 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235436856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.279 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds