Wall clock time and date at job start Sun Mar 29 2020 23:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 126.37291 * 2 1 4 4 N 1.34623 * 107.77754 * 179.75676 * 3 2 1 5 5 C 1.30951 * 108.62187 * 0.24413 * 4 3 2 6 6 N 1.38653 * 125.69644 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00471 * 0.02667 * 6 5 4 8 8 O 1.21276 * 119.99521 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.53009 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46675 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46675 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46766 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00163 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99503 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99836 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00163 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47224 * 89.99885 * 17 15 13 19 19 H 1.48494 * 109.47306 * 209.99803 * 17 15 13 20 20 H 1.48500 * 109.47503 * 329.99990 * 17 15 13 21 21 O 1.34198 * 108.60502 * 0.02562 * 5 4 3 22 22 H 1.09004 * 109.47029 * 89.99841 * 1 2 3 23 23 H 1.08996 * 109.47711 * 209.99680 * 1 2 3 24 24 H 1.09007 * 109.47285 * 330.00275 * 1 2 3 25 25 H 1.08002 * 126.11507 * 0.02879 * 3 2 1 26 26 H 0.97006 * 119.99622 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47306 * 299.99889 * 9 7 6 28 28 H 1.09001 * 109.47000 * 60.00501 * 9 7 6 29 29 H 1.08998 * 109.46951 * 300.00040 * 10 9 7 30 30 H 1.08993 * 109.47041 * 60.00092 * 10 9 7 31 31 H 1.08998 * 109.47362 * 299.99664 * 11 10 9 32 32 H 1.08993 * 109.47412 * 60.00196 * 11 10 9 33 33 H 1.08998 * 109.46951 * 299.99916 * 12 11 10 34 34 H 1.08993 * 109.47041 * 59.99968 * 12 11 10 35 35 H 0.96993 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3027 1.0804 0.0000 4 7 3.5786 0.6511 0.0054 5 6 3.5793 -0.6584 0.0035 6 7 4.7057 -1.4669 0.0071 7 6 5.9337 -0.9118 0.0138 8 8 6.0535 0.2951 0.0162 9 6 7.1579 -1.7905 0.0184 10 6 8.4134 -0.9160 0.0263 11 6 9.6563 -1.8083 0.0303 12 6 10.9118 -0.9337 0.0389 13 6 12.1360 -1.8126 0.0434 14 1 12.0293 -2.8872 0.0401 15 6 13.3924 -1.2445 0.0508 16 7 14.4608 -2.0114 0.0543 17 14 13.5769 0.6143 0.0559 18 1 13.6190 1.1037 1.4573 19 1 14.8357 0.9887 -0.6371 20 1 12.4227 1.2284 -0.6483 21 8 2.3076 -1.0872 -0.0038 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3634 0.8901 0.5138 25 1 1.9777 2.1103 0.0004 26 1 4.6098 -2.4322 0.0048 27 1 7.1492 -2.4211 0.9073 28 1 7.1577 -2.4184 -0.8726 29 1 8.4223 -0.2851 -0.8625 30 1 8.4134 -0.2884 0.9174 31 1 9.6476 -2.4395 0.9188 32 1 9.6561 -2.4355 -0.8610 33 1 10.9207 -0.3022 -0.8494 34 1 10.9117 -0.3068 0.9304 35 1 15.3445 -1.6118 0.0599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588936708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:46 Heat of formation + Delta-G solvation = -19.351006 kcal Electronic energy + Delta-G solvation = -17377.812937 eV Core-core repulsion = 14377.693322 eV Total energy + Delta-G solvation = -3000.119616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.52269 -40.04236 -35.55512 -34.97119 -34.82788 -32.66954 -32.21065 -30.26582 -27.10432 -25.78104 -23.66289 -22.21411 -21.46248 -20.27801 -20.06669 -18.76493 -17.26554 -16.98713 -16.53373 -15.87173 -15.82189 -14.55487 -14.31982 -14.26553 -14.04474 -13.69740 -13.51260 -12.71366 -12.67575 -12.59754 -12.21079 -11.79287 -11.68503 -11.15560 -10.87101 -10.79704 -10.62020 -10.57571 -10.06983 -9.85642 -9.66701 -9.51239 -9.13111 -8.49398 -8.38570 -6.00682 -3.98327 1.14294 1.53252 2.26652 2.83886 3.12105 3.35990 3.43159 3.49112 4.22196 4.50294 4.53482 4.68678 4.84947 4.90548 5.01269 5.09838 5.16008 5.34159 5.34362 5.62481 5.74700 5.84848 5.95605 6.05463 6.19584 6.36193 6.63126 6.65262 6.78692 6.96574 7.36667 7.49406 7.64174 7.84231 7.91650 8.57643 9.04141 9.62647 11.12750 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.065732 B = 0.003056 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.868702 B = 9158.885639 C = 9548.395676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.072 4.072 3 C -0.020 4.020 4 N -0.466 5.466 5 C 0.415 3.585 6 N -0.626 5.626 7 C 0.512 3.488 8 O -0.462 6.462 9 C -0.128 4.128 10 C -0.109 4.109 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 O -0.218 6.218 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.186 0.814 26 H 0.423 0.577 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.758 0.588 -0.135 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 C -0.159 4.159 4 N -0.202 5.202 5 C 0.118 3.882 6 N -0.285 5.285 7 C 0.299 3.701 8 O -0.328 6.328 9 C -0.168 4.168 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 O -0.106 6.106 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.203 0.797 26 H 0.261 0.739 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.848 1.814 -0.133 27.908 hybrid contribution -0.495 -0.087 0.014 0.503 sum -28.344 1.727 -0.119 28.397 Atomic orbital electron populations 1.20204 0.83693 1.04204 1.03593 1.23156 0.94414 0.83731 1.11172 1.23148 0.87443 1.00419 1.04862 1.71189 1.21793 1.05628 1.21575 1.21746 0.79507 0.86883 1.00055 1.42950 1.01120 1.09883 1.74507 1.21570 0.82545 0.90288 0.75688 1.90861 1.84647 1.14573 1.42718 1.21812 0.90976 0.98895 1.05083 1.21562 0.91844 0.97935 1.03359 1.21475 0.93415 0.97965 1.01108 1.19581 0.93454 0.95888 0.96413 1.21171 0.89250 0.94760 1.50595 0.91087 1.25047 0.95938 0.98054 0.94597 1.69918 0.97939 1.35221 1.51414 0.86772 0.77616 0.86342 0.78562 1.20313 1.21470 1.18865 1.84323 1.16150 1.37120 1.72969 0.90052 0.90569 0.88956 0.79736 0.73904 0.88099 0.88096 0.91431 0.91430 0.92694 0.92664 0.96550 0.96987 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.43 36.00 0.38 0.09 16 2 C -0.07 -0.68 7.38 -35.74 -0.26 -0.94 16 3 C -0.02 -0.22 11.79 -17.76 -0.21 -0.43 16 4 N -0.47 -7.09 9.47 -14.35 -0.14 -7.23 16 5 C 0.41 5.43 8.98 -86.60 -0.78 4.65 16 6 N -0.63 -6.69 5.39 -13.06 -0.07 -6.76 16 7 C 0.51 6.81 7.79 -10.99 -0.09 6.72 16 8 O -0.46 -8.36 14.65 5.56 0.08 -8.28 16 9 C -0.13 -1.44 5.70 -27.88 -0.16 -1.60 16 10 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 11 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 12 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 13 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.29 13.96 55.43 0.77 -27.52 16 17 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 21 O -0.22 -2.45 10.80 3.99 0.04 -2.41 16 22 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.42 2.66 8.82 -40.82 -0.36 2.30 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -37.05 304.52 -6.25 -43.29 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.94 Total: -3.93 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.92 Total: -9.42 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.57 Total: -41.50 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.12 Total: -10.68 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.05 -6.25 -43.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588936708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.944 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds