Wall clock time and date at job start Sun Mar 29 2020 23:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 126.37291 * 2 1 4 4 N 1.34623 * 107.77754 * 179.75676 * 3 2 1 5 5 C 1.30951 * 108.62187 * 0.24413 * 4 3 2 6 6 N 1.38653 * 125.69644 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00471 * 0.02667 * 6 5 4 8 8 O 1.21276 * 119.99521 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.53009 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46675 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46675 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46766 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00163 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99503 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99836 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00163 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47224 * 89.99885 * 17 15 13 19 19 H 1.48494 * 109.47306 * 209.99803 * 17 15 13 20 20 H 1.48500 * 109.47503 * 329.99990 * 17 15 13 21 21 O 1.34198 * 108.60502 * 0.02562 * 5 4 3 22 22 H 1.09004 * 109.47029 * 89.99841 * 1 2 3 23 23 H 1.08996 * 109.47711 * 209.99680 * 1 2 3 24 24 H 1.09007 * 109.47285 * 330.00275 * 1 2 3 25 25 H 1.08002 * 126.11507 * 0.02879 * 3 2 1 26 26 H 0.97006 * 119.99622 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47306 * 299.99889 * 9 7 6 28 28 H 1.09001 * 109.47000 * 60.00501 * 9 7 6 29 29 H 1.08998 * 109.46951 * 300.00040 * 10 9 7 30 30 H 1.08993 * 109.47041 * 60.00092 * 10 9 7 31 31 H 1.08998 * 109.47362 * 299.99664 * 11 10 9 32 32 H 1.08993 * 109.47412 * 60.00196 * 11 10 9 33 33 H 1.08998 * 109.46951 * 299.99916 * 12 11 10 34 34 H 1.08993 * 109.47041 * 59.99968 * 12 11 10 35 35 H 0.96993 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3027 1.0804 0.0000 4 7 3.5786 0.6511 0.0054 5 6 3.5793 -0.6584 0.0035 6 7 4.7057 -1.4669 0.0071 7 6 5.9337 -0.9118 0.0138 8 8 6.0535 0.2951 0.0162 9 6 7.1579 -1.7905 0.0184 10 6 8.4134 -0.9160 0.0263 11 6 9.6563 -1.8083 0.0303 12 6 10.9118 -0.9337 0.0389 13 6 12.1360 -1.8126 0.0434 14 1 12.0293 -2.8872 0.0401 15 6 13.3924 -1.2445 0.0508 16 7 14.4608 -2.0114 0.0543 17 14 13.5769 0.6143 0.0559 18 1 13.6190 1.1037 1.4573 19 1 14.8357 0.9887 -0.6371 20 1 12.4227 1.2284 -0.6483 21 8 2.3076 -1.0872 -0.0038 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3634 0.8901 0.5138 25 1 1.9777 2.1103 0.0004 26 1 4.6098 -2.4322 0.0048 27 1 7.1492 -2.4211 0.9073 28 1 7.1577 -2.4184 -0.8726 29 1 8.4223 -0.2851 -0.8625 30 1 8.4134 -0.2884 0.9174 31 1 9.6476 -2.4395 0.9188 32 1 9.6561 -2.4355 -0.8610 33 1 10.9207 -0.3022 -0.8494 34 1 10.9117 -0.3068 0.9304 35 1 15.3445 -1.6118 0.0599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588936708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:46 Heat of formation + Delta-G solvation = -47.230054 kcal Electronic energy + Delta-G solvation = -17379.021864 eV Core-core repulsion = 14377.693322 eV Total energy + Delta-G solvation = -3001.328542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.37022 -41.07001 -36.83784 -36.20399 -35.73324 -34.60895 -32.95475 -31.84854 -28.31572 -26.93473 -24.84285 -23.47476 -22.44531 -21.71046 -21.26609 -19.65561 -18.83576 -18.13685 -17.91756 -16.89727 -16.68597 -16.31021 -15.63801 -15.43539 -15.09204 -14.70775 -14.28225 -14.10956 -13.80297 -13.73532 -13.53682 -13.19076 -12.89030 -12.64097 -12.35587 -12.07724 -11.78281 -11.74886 -11.64500 -11.41419 -11.31143 -11.23463 -10.99442 -10.74658 -9.20479 -8.28562 -6.31118 0.29560 0.68216 1.35353 1.35592 1.37212 1.49774 1.91127 2.36758 2.38319 3.07123 3.30585 3.85997 3.91196 3.98974 4.15789 4.18257 4.37500 4.60338 4.65811 4.72413 4.76503 4.84692 4.88589 5.10397 5.14504 5.21437 5.22212 5.29960 5.35447 5.63193 5.68368 5.70562 5.88466 6.31133 6.73450 6.77337 7.04361 7.33710 8.87921 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.065732 B = 0.003056 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.868702 B = 9158.885639 C = 9548.395676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.055 4.055 3 C -0.051 4.051 4 N -0.513 5.513 5 C 0.394 3.606 6 N -0.608 5.608 7 C 0.517 3.483 8 O -0.518 6.518 9 C -0.116 4.116 10 C -0.102 4.102 11 C -0.093 4.093 12 C -0.019 4.019 13 C -0.528 4.528 14 H 0.039 0.961 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.252 1.252 21 O -0.217 6.217 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.115 0.885 25 H 0.206 0.794 26 H 0.444 0.556 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.272 0.713 -0.118 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 C -0.188 4.188 4 N -0.250 5.250 5 C 0.097 3.903 6 N -0.269 5.269 7 C 0.306 3.694 8 O -0.389 6.389 9 C -0.155 4.155 10 C -0.140 4.140 11 C -0.130 4.130 12 C -0.057 4.057 13 C -0.566 4.566 14 H 0.058 0.942 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.176 1.176 21 O -0.104 6.104 22 H 0.116 0.884 23 H 0.105 0.895 24 H 0.133 0.867 25 H 0.223 0.777 26 H 0.285 0.715 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.414 1.887 -0.115 30.473 hybrid contribution 0.192 -0.196 0.007 0.275 sum -30.222 1.691 -0.109 30.269 Atomic orbital electron populations 1.20492 0.80044 1.05863 1.05140 1.24096 0.96084 0.82719 1.07878 1.23581 0.86628 1.02110 1.06512 1.71099 1.24216 1.07176 1.22559 1.21858 0.80451 0.86870 1.01119 1.42674 1.00009 1.10753 1.73434 1.21838 0.83521 0.89656 0.74425 1.90846 1.85516 1.16913 1.45592 1.21724 0.87662 0.97961 1.08144 1.21347 0.92741 0.97740 1.02146 1.21325 0.92331 0.97599 1.01784 1.19596 0.94024 0.95947 0.96100 1.21554 0.91271 0.94073 1.49706 0.94246 1.25985 0.95678 1.03278 0.94429 1.70057 0.98612 1.37495 1.53012 0.85713 0.78029 0.80135 0.79124 1.19321 1.20875 1.17610 1.84348 1.15640 1.37674 1.72771 0.88360 0.89451 0.86708 0.77703 0.71458 0.84954 0.84973 0.92810 0.92724 0.91999 0.92020 0.96845 0.96942 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.43 71.23 0.74 0.38 16 2 C -0.05 -0.94 7.38 24.76 0.18 -0.76 16 3 C -0.05 -1.10 11.79 83.34 0.98 -0.12 16 4 N -0.51 -15.67 9.47 -313.65 -2.97 -18.64 16 5 C 0.39 10.01 8.98 178.94 1.61 11.61 16 6 N -0.61 -12.06 5.39 -423.81 -2.28 -14.35 16 7 C 0.52 13.09 7.79 87.66 0.68 13.78 16 8 O -0.52 -18.88 14.65 -3.02 -0.04 -18.92 16 9 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 10 C -0.10 -3.09 4.50 30.60 0.14 -2.95 16 11 C -0.09 -3.37 5.15 30.60 0.16 -3.22 16 12 C -0.02 -0.92 4.04 29.85 0.12 -0.80 16 13 C -0.53 -30.76 9.66 25.60 0.25 -30.51 16 14 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 15 C 0.00 0.17 5.47 84.66 0.46 0.63 16 16 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 17 Si 0.95 46.02 27.47 68.60 1.88 47.90 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.25 -11.69 6.54 99.48 0.65 -11.03 16 21 O -0.22 -4.55 10.80 -8.65 -0.09 -4.64 16 22 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 23 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 25 H 0.21 3.16 8.06 -2.91 -0.02 3.13 16 26 H 0.44 4.47 8.82 -92.70 -0.82 3.65 16 27 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 30 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 34 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -83.09 304.52 2.51 -80.58 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 0.22 Total: 2.27 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.49 Total: -14.08 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -4.95 Total: -93.11 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.14 Total: -23.56 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Total: -83.09 2.51 -80.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588936708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.354 kcal (2) G-P(sol) polarization free energy of solvation -83.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds