Wall clock time and date at job start Sun Mar 29 2020 23:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 126.77279 * 2 1 4 4 C 1.41378 * 103.98546 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.80201 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46932 * 94.98563 * 5 4 3 7 7 C 1.47904 * 110.99908 * 69.87513 * 6 5 4 8 8 C 1.53997 * 107.05618 * 214.15197 * 7 6 5 9 9 C 1.54598 * 105.13754 * 1.22428 * 8 7 6 10 10 O 1.42899 * 110.72499 * 263.59697 * 9 8 7 11 11 C 1.50699 * 110.72035 * 140.49280 * 9 8 7 12 12 H 1.08005 * 120.00123 * 241.45489 * 11 9 8 13 13 C 1.37877 * 120.00237 * 61.45267 * 11 9 8 14 14 N 1.31515 * 119.99676 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00241 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47235 * 90.00029 * 15 13 11 17 17 H 1.48506 * 109.46816 * 210.00000 * 15 13 11 18 18 H 1.48502 * 109.46823 * 329.99981 * 15 13 11 19 19 C 1.48529 * 111.00188 * 312.47870 * 6 5 4 20 20 N 1.30171 * 106.39621 * 0.02562 * 4 3 2 21 21 O 1.20923 * 111.60389 * 359.97438 * 20 4 3 22 22 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47490 * 299.99356 * 1 2 3 24 24 H 1.09003 * 109.47634 * 60.00311 * 1 2 3 25 25 H 1.08005 * 128.00874 * 0.06144 * 3 2 1 26 26 H 1.09009 * 109.46874 * 214.98762 * 5 4 3 27 27 H 1.09003 * 109.46761 * 334.98162 * 5 4 3 28 28 H 1.08990 * 109.91695 * 333.50766 * 7 6 5 29 29 H 1.09005 * 109.91770 * 94.80019 * 7 6 5 30 30 H 1.08995 * 110.30754 * 120.14252 * 8 7 6 31 31 H 1.08992 * 110.30652 * 242.21173 * 8 7 6 32 32 H 0.96697 * 113.99969 * 298.54746 * 10 9 8 33 33 H 0.97003 * 119.99557 * 179.97438 * 14 13 11 34 34 H 1.09010 * 110.66143 * 278.15557 * 19 6 5 35 35 H 1.08994 * 110.66744 * 41.28297 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6212 0.5374 -0.0006 5 6 4.9210 1.3003 -0.0003 6 7 5.4044 1.4434 1.3794 7 6 5.8533 0.1425 1.9213 8 6 5.5150 0.1380 3.4237 9 6 4.8234 1.4957 3.6858 10 8 5.7608 2.4530 4.1826 11 6 3.6728 1.3315 4.6449 12 1 2.6685 1.5744 4.3302 13 6 3.9019 0.8713 5.9243 14 7 5.1248 0.5760 6.3076 15 14 2.4754 0.6671 7.1130 16 1 1.9179 -0.7034 6.9865 17 1 2.9545 0.8804 8.5023 18 1 1.4199 1.6622 6.7950 19 6 4.3163 1.9033 2.2797 20 7 3.4763 -0.7562 -0.0015 21 8 2.3095 -1.0735 -0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.0343 2.1272 0.0009 26 1 5.6604 0.7584 -0.5902 27 1 4.7628 2.2876 -0.4343 28 1 5.3276 -0.6700 1.4199 29 1 6.9290 0.0337 1.7826 30 1 4.8370 -0.6831 3.6563 31 1 6.4259 0.0551 4.0163 32 1 6.1664 2.2059 5.0248 33 1 5.2860 0.2525 7.2078 34 1 4.1935 2.9844 2.2136 35 1 3.3817 1.3939 2.0451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:15 Heat of formation + Delta-G solvation = 18.671154 kcal Electronic energy + Delta-G solvation = -19417.610257 eV Core-core repulsion = 16419.139406 eV Total energy + Delta-G solvation = -2998.470851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.69772 -38.52184 -35.32060 -33.64121 -32.86228 -32.09113 -29.89564 -28.16185 -27.55309 -26.04585 -24.07118 -22.83662 -20.75700 -19.72066 -19.01272 -17.51857 -16.98621 -16.91939 -15.26827 -14.91478 -14.61710 -14.48588 -13.78901 -13.73294 -13.28403 -13.20039 -13.06531 -12.43070 -12.40809 -11.94095 -11.60222 -11.28426 -11.26630 -10.95968 -10.67312 -10.63037 -10.43749 -10.32625 -9.78340 -9.77593 -9.13612 -9.09436 -8.57517 -8.08945 -7.82516 -6.18792 -4.26829 1.68183 2.46219 3.22003 3.29194 3.31019 3.32295 4.29748 4.39893 4.59910 4.80143 5.09313 5.16394 5.25790 5.33876 5.45358 5.60284 5.73251 5.78696 5.83103 5.97654 6.06414 6.13169 6.24466 6.29312 6.53383 6.62038 6.90820 7.09185 7.40615 7.53420 7.56123 7.64999 7.83901 8.20585 8.52470 8.74906 9.41643 9.57807 10.88441 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.008308 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.806791 B = 3369.393750 C = 4224.818103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.224 4.224 4 C -0.003 4.003 5 C 0.119 3.881 6 N -0.499 5.499 7 C 0.026 3.974 8 C -0.126 4.126 9 C 0.257 3.743 10 O -0.580 6.580 11 C -0.536 4.536 12 H 0.058 0.942 13 C 0.071 3.929 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.048 3.952 20 N -0.358 5.358 21 O 0.093 5.907 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.168 0.832 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.377 0.623 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 -0.529 -11.329 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.246 4.246 4 C -0.164 4.164 5 C -0.011 4.011 6 N -0.221 5.221 7 C -0.102 4.102 8 C -0.165 4.165 9 C 0.216 3.784 10 O -0.388 6.388 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.079 4.079 20 N -0.063 5.063 21 O 0.028 5.972 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.186 0.814 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.203 -0.935 -11.752 12.886 hybrid contribution -1.608 -0.359 1.276 2.084 sum -6.811 -1.295 -10.475 12.562 Atomic orbital electron populations 1.20295 0.84342 1.04386 1.03908 1.24418 0.96255 0.86373 1.03213 1.22417 0.91521 1.00892 1.09770 1.24567 0.99068 0.90370 1.02418 1.20993 0.88072 0.98092 0.93958 1.65125 1.32087 1.25035 0.99902 1.23053 0.99579 0.89827 0.97729 1.22894 1.01061 1.01122 0.91454 1.19330 0.86710 0.83900 0.88436 1.86134 1.60945 1.49159 1.42597 1.21562 0.93939 1.44519 0.97403 0.92350 1.24994 0.96000 0.94052 0.98085 1.69738 1.19478 1.44796 1.19297 0.86507 0.82379 0.78465 0.80145 1.20604 1.20976 1.19763 1.23327 0.91857 0.99888 0.92849 1.73832 0.96722 1.16518 1.19277 1.84792 1.11504 1.33285 1.67639 0.90149 0.89148 0.89500 0.81414 0.89834 0.88858 0.93835 0.91798 0.92375 0.91534 0.77391 0.92376 0.90981 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 36.00 0.38 -0.26 16 2 C -0.04 -0.54 7.49 -35.31 -0.26 -0.80 16 3 C -0.22 -3.29 9.60 -39.38 -0.38 -3.66 16 4 C 0.00 -0.06 4.75 -82.10 -0.39 -0.45 16 5 C 0.12 1.97 6.08 -4.97 -0.03 1.94 16 6 N -0.50 -10.19 5.54 -231.89 -1.28 -11.47 16 7 C 0.03 0.55 6.46 -2.75 -0.02 0.53 16 8 C -0.13 -3.12 5.26 -25.37 -0.13 -3.25 16 9 C 0.26 6.62 0.95 -89.91 -0.09 6.53 16 10 O -0.58 -15.71 13.09 -35.23 -0.46 -16.17 16 11 C -0.54 -14.72 8.15 -34.44 -0.28 -15.00 16 12 H 0.06 1.59 7.78 -52.48 -0.41 1.18 16 13 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 14 N -0.89 -24.46 11.00 55.43 0.61 -23.85 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.05 1.07 5.40 -1.90 -0.01 1.06 16 20 N -0.36 -6.52 10.80 33.42 0.36 -6.16 16 21 O 0.09 1.54 11.20 17.19 0.19 1.74 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 26 H 0.08 1.29 8.08 -51.92 -0.42 0.87 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.04 0.92 6.07 -51.93 -0.32 0.61 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.53 7.84 -51.93 -0.41 1.12 16 31 H 0.07 1.70 7.98 -51.93 -0.41 1.29 16 32 H 0.38 10.25 7.46 45.56 0.34 10.59 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.07 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.05 1.18 5.08 -51.93 -0.26 0.92 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -30.31 287.85 -6.56 -36.86 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.98 Total: 10.30 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.31 Total: -11.53 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.31 Total: -41.49 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.27 Total: -14.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.31 -6.56 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.533 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds