Wall clock time and date at job start Sun Mar 29 2020 23:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 126.77279 * 2 1 4 4 C 1.41378 * 103.98546 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.80201 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46932 * 94.98563 * 5 4 3 7 7 C 1.47904 * 110.99908 * 69.87513 * 6 5 4 8 8 C 1.53997 * 107.05618 * 214.15197 * 7 6 5 9 9 C 1.54598 * 105.13754 * 1.22428 * 8 7 6 10 10 O 1.42899 * 110.72499 * 263.59697 * 9 8 7 11 11 C 1.50699 * 110.72035 * 140.49280 * 9 8 7 12 12 H 1.08005 * 120.00123 * 241.45489 * 11 9 8 13 13 C 1.37877 * 120.00237 * 61.45267 * 11 9 8 14 14 N 1.31515 * 119.99676 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00241 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47235 * 90.00029 * 15 13 11 17 17 H 1.48506 * 109.46816 * 210.00000 * 15 13 11 18 18 H 1.48502 * 109.46823 * 329.99981 * 15 13 11 19 19 C 1.48529 * 111.00188 * 312.47870 * 6 5 4 20 20 N 1.30171 * 106.39621 * 0.02562 * 4 3 2 21 21 O 1.20923 * 111.60389 * 359.97438 * 20 4 3 22 22 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47490 * 299.99356 * 1 2 3 24 24 H 1.09003 * 109.47634 * 60.00311 * 1 2 3 25 25 H 1.08005 * 128.00874 * 0.06144 * 3 2 1 26 26 H 1.09009 * 109.46874 * 214.98762 * 5 4 3 27 27 H 1.09003 * 109.46761 * 334.98162 * 5 4 3 28 28 H 1.08990 * 109.91695 * 333.50766 * 7 6 5 29 29 H 1.09005 * 109.91770 * 94.80019 * 7 6 5 30 30 H 1.08995 * 110.30754 * 120.14252 * 8 7 6 31 31 H 1.08992 * 110.30652 * 242.21173 * 8 7 6 32 32 H 0.96697 * 113.99969 * 298.54746 * 10 9 8 33 33 H 0.97003 * 119.99557 * 179.97438 * 14 13 11 34 34 H 1.09010 * 110.66143 * 278.15557 * 19 6 5 35 35 H 1.08994 * 110.66744 * 41.28297 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6212 0.5374 -0.0006 5 6 4.9210 1.3003 -0.0003 6 7 5.4044 1.4434 1.3794 7 6 5.8533 0.1425 1.9213 8 6 5.5150 0.1380 3.4237 9 6 4.8234 1.4957 3.6858 10 8 5.7608 2.4530 4.1826 11 6 3.6728 1.3315 4.6449 12 1 2.6685 1.5744 4.3302 13 6 3.9019 0.8713 5.9243 14 7 5.1248 0.5760 6.3076 15 14 2.4754 0.6671 7.1130 16 1 1.9179 -0.7034 6.9865 17 1 2.9545 0.8804 8.5023 18 1 1.4199 1.6622 6.7950 19 6 4.3163 1.9033 2.2797 20 7 3.4763 -0.7562 -0.0015 21 8 2.3095 -1.0735 -0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.0343 2.1272 0.0009 26 1 5.6604 0.7584 -0.5902 27 1 4.7628 2.2876 -0.4343 28 1 5.3276 -0.6700 1.4199 29 1 6.9290 0.0337 1.7826 30 1 4.8370 -0.6831 3.6563 31 1 6.4259 0.0551 4.0163 32 1 6.1664 2.2059 5.0248 33 1 5.2860 0.2525 7.2078 34 1 4.1935 2.9844 2.2136 35 1 3.3817 1.3939 2.0451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:14 Heat of formation + Delta-G solvation = -4.155056 kcal Electronic energy + Delta-G solvation = -19418.600076 eV Core-core repulsion = 16419.139406 eV Total energy + Delta-G solvation = -2999.460670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.91454 -40.26678 -37.09191 -34.89998 -34.19705 -34.10009 -31.60041 -29.93236 -28.58350 -27.74519 -25.88136 -24.07199 -22.32856 -21.57968 -20.46151 -19.13388 -18.60475 -18.17898 -17.05196 -16.88386 -16.17690 -16.04232 -15.48357 -14.97925 -14.65120 -14.52701 -14.18025 -13.94946 -13.73283 -13.41729 -13.22115 -13.16690 -12.90220 -12.65682 -12.49663 -12.36929 -12.24141 -11.92476 -11.70976 -11.14167 -11.04990 -10.63366 -10.21388 -10.13380 -9.48450 -8.24220 -6.40323 0.55704 1.25519 1.37235 1.38828 1.48863 2.28369 2.35372 2.99462 3.06710 3.31769 3.55338 3.91813 4.03424 4.10256 4.16877 4.31640 4.38234 4.47935 4.59908 4.70518 4.72663 4.74027 4.82347 4.90163 5.01745 5.04335 5.16699 5.26712 5.43451 5.50078 5.67606 5.83006 6.05103 6.18508 6.65122 7.31269 7.33964 7.44054 8.81693 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.008308 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.806791 B = 3369.393750 C = 4224.818103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.032 4.032 3 C -0.238 4.238 4 C -0.018 4.018 5 C 0.118 3.882 6 N -0.503 5.503 7 C 0.035 3.965 8 C -0.117 4.117 9 C 0.239 3.761 10 O -0.588 6.588 11 C -0.561 4.561 12 H 0.054 0.946 13 C 0.028 3.972 14 N -0.912 5.912 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.267 1.267 19 C 0.061 3.939 20 N -0.391 5.391 21 O 0.079 5.921 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.191 0.809 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.371 0.629 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -0.066 -12.137 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.259 4.259 4 C -0.178 4.178 5 C -0.011 4.011 6 N -0.225 5.225 7 C -0.093 4.093 8 C -0.156 4.156 9 C 0.199 3.801 10 O -0.395 6.395 11 C -0.599 4.599 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.552 5.552 15 Si 0.784 3.216 16 H -0.203 1.203 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.067 4.067 20 N -0.099 5.099 21 O 0.015 5.985 22 H 0.110 0.890 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.208 0.792 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.798 -0.474 -12.581 14.309 hybrid contribution -1.142 -0.512 1.501 1.954 sum -7.940 -0.986 -11.080 13.667 Atomic orbital electron populations 1.20562 0.80844 1.05806 1.05611 1.25294 0.98074 0.85298 1.00868 1.22749 0.90645 1.02274 1.10272 1.24723 1.00021 0.90384 1.02680 1.21115 0.88438 0.99868 0.91636 1.65077 1.31808 1.24235 1.01420 1.22923 1.00372 0.90672 0.95302 1.22681 0.99383 0.99850 0.93680 1.19590 0.86289 0.84227 0.89976 1.86124 1.61255 1.49812 1.42306 1.21823 0.94271 1.45330 0.98467 0.92781 1.25734 0.98425 0.93583 0.99544 1.69829 1.20944 1.44727 1.19657 0.85546 0.79523 0.78453 0.78075 1.20257 1.20415 1.19154 1.23122 0.92339 0.99904 0.91307 1.73815 0.97790 1.17398 1.20861 1.84742 1.11434 1.34445 1.67845 0.88953 0.88324 0.86593 0.79208 0.88766 0.86144 0.93702 0.90582 0.94932 0.93342 0.78021 0.92200 0.90837 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.45 71.23 0.74 -0.30 16 2 C -0.03 -0.82 7.49 25.04 0.19 -0.63 16 3 C -0.24 -6.48 9.60 22.40 0.21 -6.27 16 4 C -0.02 -0.59 4.75 43.58 0.21 -0.38 16 5 C 0.12 3.71 6.08 85.56 0.52 4.23 16 6 N -0.50 -19.96 5.54 -887.55 -4.91 -24.87 16 7 C 0.04 1.50 6.46 86.45 0.56 2.06 16 8 C -0.12 -5.88 5.26 31.48 0.17 -5.72 16 9 C 0.24 12.43 0.95 -10.34 -0.01 12.42 16 10 O -0.59 -32.14 13.09 -148.98 -1.95 -34.09 16 11 C -0.56 -30.98 8.15 25.60 0.21 -30.77 16 12 H 0.05 2.95 7.78 -2.91 -0.02 2.93 16 13 C 0.03 1.50 5.28 84.65 0.45 1.95 16 14 N -0.91 -50.46 11.00 21.45 0.24 -50.23 16 15 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 C 0.06 2.68 5.40 86.65 0.47 3.14 16 20 N -0.39 -14.03 10.80 -49.56 -0.54 -14.56 16 21 O 0.08 2.56 11.20 71.69 0.80 3.36 16 22 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 26 H 0.09 2.74 8.08 -2.38 -0.02 2.73 16 27 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.04 1.90 6.07 -2.39 -0.01 1.88 16 29 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.03 1.75 7.84 -2.39 -0.02 1.73 16 31 H 0.05 2.55 7.98 -2.39 -0.02 2.53 16 32 H 0.37 20.67 7.46 -74.06 -0.55 20.12 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.34 16 34 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.05 2.39 5.08 -2.39 -0.01 2.38 16 Total: -1.00 -64.99 287.85 -0.07 -65.06 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.55 Total: 30.79 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.71 Total: -20.26 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -5.21 Total: -89.65 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.15 Total: -30.73 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.99 -0.07 -65.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.905 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds