Wall clock time and date at job start Sun Mar 29 2020 23:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00457 * 2 1 4 4 C 1.53005 * 109.47456 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46583 * 65.00282 * 4 3 2 6 6 C 1.46505 * 119.99756 * 262.23133 * 5 4 3 7 7 C 1.50706 * 109.46931 * 267.17466 * 6 5 4 8 8 H 1.08001 * 120.00096 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99951 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00028 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00106 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47094 * 59.99515 * 11 9 7 13 13 H 1.48495 * 109.47020 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46777 * 299.99575 * 11 9 7 15 15 C 1.34771 * 120.00353 * 82.23018 * 5 4 3 16 16 O 1.21700 * 120.00419 * 181.29256 * 15 5 4 17 17 C 1.46679 * 119.99844 * 1.29988 * 15 5 4 18 18 C 1.37872 * 126.23367 * 170.59380 * 17 15 5 19 19 C 1.39841 * 107.08428 * 179.72344 * 18 17 15 20 20 C 1.35452 * 107.86371 * 0.41045 * 19 18 17 21 21 N 1.35538 * 108.87108 * 359.58263 * 20 19 18 22 22 H 0.96996 * 125.67539 * 180.23006 * 21 20 19 23 23 H 1.08993 * 109.47062 * 59.99510 * 1 2 3 24 24 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46682 * 299.99833 * 1 2 3 26 26 H 1.09007 * 109.47058 * 60.00035 * 3 2 1 27 27 H 1.08995 * 109.47039 * 300.00417 * 3 2 1 28 28 H 1.09002 * 109.47074 * 305.00481 * 4 3 2 29 29 H 1.08995 * 109.46954 * 184.99837 * 4 3 2 30 30 H 1.08993 * 109.47569 * 27.17275 * 6 5 4 31 31 H 1.08996 * 109.47001 * 147.17837 * 6 5 4 32 32 H 0.96999 * 119.99718 * 180.02562 * 10 9 7 33 33 H 1.08000 * 126.46031 * 359.96547 * 18 17 15 34 34 H 1.07994 * 126.06776 * 180.25422 * 19 18 17 35 35 H 1.07996 * 125.56619 * 179.84575 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2701 -0.8709 -1.2934 7 6 5.7378 -1.0914 -1.0318 8 1 6.3869 -0.2473 -0.8514 9 6 6.2518 -2.3707 -1.0226 10 7 5.4612 -3.3986 -1.2417 11 14 8.0709 -2.6441 -0.6976 12 1 8.4205 -2.1074 0.6421 13 1 8.3683 -4.0983 -0.7408 14 1 8.8698 -1.9440 -1.7353 15 6 4.1125 1.3127 -2.3632 16 8 4.4562 0.7929 -3.4086 17 6 3.8462 2.7542 -2.3138 18 6 4.1151 3.6673 -3.3113 19 6 3.6975 4.9183 -2.8466 20 6 3.2005 4.7529 -1.5975 21 7 3.2818 3.4418 -1.2634 22 1 2.9911 3.0530 -0.4237 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8509 0.5683 0.8427 29 1 3.9785 2.1764 0.0902 30 1 3.6841 -1.3844 -0.5313 31 1 4.0130 -1.2653 -2.2765 32 1 5.8228 -4.2987 -1.2349 33 1 4.5604 3.4555 -4.2722 34 1 3.7624 5.8513 -3.3867 35 1 2.8004 5.5368 -0.9717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:14 Heat of formation + Delta-G solvation = -3.419970 kcal Electronic energy + Delta-G solvation = -19041.731225 eV Core-core repulsion = 16042.302430 eV Total energy + Delta-G solvation = -2999.428794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28842 -38.55221 -37.62152 -35.11432 -32.81559 -31.12471 -29.60049 -29.16813 -26.92836 -26.15090 -23.46752 -22.92263 -21.17106 -20.25386 -19.72743 -17.36583 -16.55993 -16.41826 -15.85109 -15.39127 -15.05355 -14.94934 -14.26604 -14.10350 -13.69784 -13.38052 -13.05712 -12.47323 -12.23503 -12.10857 -12.04509 -11.95128 -11.75208 -11.30000 -11.01174 -10.86269 -10.46438 -10.13006 -9.65600 -9.62892 -9.13205 -8.80335 -8.37357 -8.06410 -7.66712 -5.98605 -4.03360 1.87771 2.96944 3.29894 3.35414 3.39710 3.43218 3.75124 3.85527 4.01765 4.49297 4.87296 5.00643 5.09476 5.15326 5.24153 5.33081 5.34944 5.37666 5.42049 5.52870 5.68368 5.72742 5.96802 6.26755 6.35554 6.87404 7.08030 7.18659 7.24310 7.49563 7.51607 7.58458 7.97959 8.27980 8.37573 8.91589 9.06724 9.60829 11.09398 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.018686 B = 0.007581 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.106746 B = 3692.569624 C = 4685.025246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.026 3.974 4 C 0.092 3.908 5 N -0.586 5.586 6 C 0.253 3.747 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.574 3.426 16 O -0.524 6.524 17 C -0.034 4.034 18 C -0.123 4.123 19 C -0.210 4.210 20 C -0.005 4.005 21 N -0.553 5.553 22 H 0.419 0.581 23 H 0.038 0.962 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 14.425 4.703 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.053 4.053 4 C -0.034 4.034 5 N -0.317 5.317 6 C 0.134 3.866 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.361 3.639 16 O -0.400 6.400 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.235 4.235 20 C -0.140 4.140 21 N -0.159 5.159 22 H 0.266 0.734 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.958 13.593 4.291 16.835 hybrid contribution 0.593 0.031 0.682 0.904 sum -8.365 13.624 4.973 16.743 Atomic orbital electron populations 1.22759 0.81560 1.02981 0.99356 1.88102 1.19096 1.25903 1.95133 1.23397 0.95416 0.86628 0.99832 1.21875 0.91074 0.99393 0.91028 1.48101 1.64526 1.12123 1.06941 1.19329 0.95774 0.72372 0.99113 1.21433 0.93926 0.92479 1.48968 0.92582 1.24914 0.98045 0.95833 0.95191 1.69936 1.35218 0.98697 1.49363 0.86570 0.85238 0.76982 0.78688 1.20340 1.21173 1.20154 1.17084 0.78742 0.83606 0.84516 1.90815 1.47469 1.71947 1.29751 1.21006 1.09725 0.93464 0.90575 1.21292 1.03280 0.91496 0.98885 1.20835 1.08242 0.98235 0.96146 1.21988 1.07382 0.86013 0.98607 1.43554 1.48437 1.07865 1.16045 0.73356 0.94358 0.89383 0.94441 0.92607 0.93108 0.87652 0.89986 0.93910 0.93962 0.92708 0.83761 0.84445 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.36 -6.01 10.56 -35.23 -0.37 -6.38 16 3 C 0.03 0.35 4.74 37.16 0.18 0.53 16 4 C 0.09 1.49 5.31 -4.04 -0.02 1.47 16 5 N -0.59 -12.93 2.43 -176.60 -0.43 -13.36 16 6 C 0.25 6.83 5.11 -5.19 -0.03 6.80 16 7 C -0.53 -15.39 9.37 -34.44 -0.32 -15.72 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 11 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.57 13.00 7.54 -12.86 -0.10 12.90 16 16 O -0.52 -14.11 16.51 5.19 0.09 -14.02 16 17 C -0.03 -0.61 6.41 -81.98 -0.53 -1.14 16 18 C -0.12 -2.04 10.67 -39.12 -0.42 -2.45 16 19 C -0.21 -2.71 10.81 -39.98 -0.43 -3.14 16 20 C -0.01 -0.06 11.89 -16.91 -0.20 -0.26 16 21 N -0.55 -7.40 4.21 -9.39 -0.04 -7.44 16 22 H 0.42 4.76 3.52 -40.82 -0.14 4.62 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 28 H 0.11 1.76 8.01 -51.93 -0.42 1.34 16 29 H 0.08 1.12 5.16 -51.93 -0.27 0.86 16 30 H 0.04 1.18 7.96 -51.93 -0.41 0.77 16 31 H 0.04 1.29 7.49 -51.93 -0.39 0.90 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -35.45 297.75 -5.88 -41.33 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.48 Total: 2.25 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.85 Total: 2.19 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.27 Total: -47.13 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.29 Total: -20.40 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.45 -5.88 -41.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.909 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds