Wall clock time and date at job start Sun Mar 29 2020 23:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48494 * 109.47044 * 270.00075 * 3 2 1 5 5 H 1.48506 * 109.47064 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.47612 * 149.99752 * 3 2 1 7 7 C 1.37877 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00117 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00102 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00295 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00013 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00107 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00165 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46993 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46969 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.34944 * 126.03372 * 125.00124 * 17 16 15 19 19 C 1.35317 * 107.74658 * 179.97438 * 18 17 16 20 20 C 1.39871 * 107.91935 * 0.02562 * 19 18 17 21 21 N 1.30845 * 108.20108 * 359.74200 * 20 19 18 22 22 H 0.96993 * 120.00167 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47354 * 59.99851 * 9 7 2 24 24 H 1.09005 * 109.47264 * 299.99965 * 9 7 2 25 25 H 0.97010 * 119.99738 * 0.02562 * 10 9 7 26 26 H 0.97010 * 119.99926 * 0.02562 * 13 11 10 27 27 H 1.08992 * 109.46764 * 60.00078 * 14 13 11 28 28 H 1.08996 * 109.46739 * 299.99985 * 14 13 11 29 29 H 1.09004 * 109.47298 * 60.00068 * 15 14 13 30 30 H 1.09004 * 109.47552 * 299.99940 * 15 14 13 31 31 H 1.09004 * 109.46930 * 59.99996 * 16 15 14 32 32 H 1.09000 * 109.47312 * 299.99939 * 16 15 14 33 33 H 1.08001 * 126.12891 * 0.02562 * 18 17 16 34 34 H 1.08002 * 126.04160 * 179.97438 * 19 18 17 35 35 H 1.07995 * 125.90070 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8215 0.0009 12 8 6.1151 -1.8974 0.0014 13 7 5.7743 -4.0922 0.0013 14 6 7.2146 -4.3599 0.0018 15 6 7.4524 -5.8713 0.0016 16 6 8.9567 -6.1508 0.0015 17 7 9.1844 -7.5981 0.0019 18 6 9.9260 -8.2852 -0.8919 19 6 9.8856 -9.5921 -0.5434 20 6 9.0917 -9.7077 0.6023 21 7 8.6750 -8.5122 0.9331 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8753 -0.6804 -0.8889 25 1 3.3696 -3.3126 0.0002 26 1 5.1439 -4.8295 0.0013 27 1 7.6654 -3.9209 0.8918 28 1 7.6659 -3.9213 -0.8881 29 1 7.0016 -6.3099 -0.8887 30 1 7.0010 -6.3103 0.8913 31 1 9.4078 -5.7122 0.8915 32 1 9.4078 -5.7119 -0.8885 33 1 10.4573 -7.8670 -1.7341 34 1 10.3786 -10.4029 -1.0593 35 1 8.8650 -10.6246 1.1259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:39 Heat of formation + Delta-G solvation = 42.242823 kcal Electronic energy + Delta-G solvation = -17220.518688 eV Core-core repulsion = 14255.362732 eV Total energy + Delta-G solvation = -2965.155956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37247 -39.36938 -36.19677 -34.26461 -33.67971 -32.32551 -30.83561 -30.00137 -27.83884 -25.64301 -22.66147 -21.84155 -21.30267 -20.86981 -20.21583 -18.19146 -17.57681 -16.35250 -16.13022 -15.84284 -15.21188 -14.73034 -14.44480 -14.29698 -13.97709 -13.65905 -13.19625 -13.12022 -12.85008 -12.50880 -12.31938 -12.11177 -11.86904 -11.32338 -10.97651 -10.86489 -10.74836 -9.95992 -9.73830 -9.61187 -9.45175 -8.90900 -8.88093 -8.74616 -8.01996 -6.19946 -4.21869 1.62576 2.19923 2.58881 3.21255 3.28854 3.36072 3.44166 3.78814 4.16795 4.35106 4.50312 4.56671 4.67503 4.80322 4.95335 5.03030 5.13255 5.15645 5.29907 5.46806 5.49973 5.72342 5.81856 5.89543 6.37282 6.68152 6.74025 6.74788 7.12150 7.24151 7.40527 7.43425 7.56143 8.28803 8.68877 8.81801 9.19386 9.41353 10.92065 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.062964 B = 0.002920 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.592114 B = 9586.787151 C = 9892.791979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.604 6.604 13 N -0.756 5.756 14 C 0.145 3.855 15 C -0.143 4.143 16 C 0.137 3.863 17 N -0.371 5.371 18 C 0.053 3.947 19 C -0.278 4.278 20 C 0.041 3.959 21 N -0.294 5.294 22 H 0.267 0.733 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.393 0.607 26 H 0.394 0.606 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.093 -17.571 -1.839 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.484 6.484 13 N -0.413 5.413 14 C 0.019 3.981 15 C -0.181 4.181 16 C 0.015 3.985 17 N -0.153 5.153 18 C -0.093 4.093 19 C -0.308 4.308 20 C -0.145 4.145 21 N -0.115 5.115 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.226 0.774 26 H 0.228 0.772 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 18.926 -15.689 -1.010 24.604 hybrid contribution 0.222 -0.369 -0.682 0.806 sum 19.147 -16.057 -1.692 25.047 Atomic orbital electron populations 1.69879 1.06215 1.27418 1.49560 1.24788 0.94795 0.99185 0.93904 0.86803 0.80604 0.83162 0.79040 1.19864 1.20932 1.18427 1.21097 0.88565 0.95201 1.53179 0.90302 1.19365 0.94829 0.77620 0.96644 1.45401 1.03705 1.11099 1.77247 1.16096 0.83596 0.82600 0.78247 1.90860 1.55426 1.43204 1.58921 1.45050 1.07224 1.06753 1.82294 1.20901 0.81575 0.93182 1.02406 1.22046 0.95098 0.96494 1.04511 1.21639 0.97516 0.74846 1.04491 1.48777 1.38311 1.07356 1.20864 1.22615 0.97484 0.93010 0.96215 1.21527 1.10402 0.96397 1.02460 1.23918 0.97443 0.96286 0.96828 1.77381 1.21750 0.98969 1.13414 0.92272 0.95889 0.96367 0.77418 0.77237 0.91557 0.91706 0.90680 0.89637 0.89188 0.88115 0.80963 0.83635 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.54 -15.05 9.83 -34.44 -0.34 -15.39 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.24 5.98 4.50 -5.19 -0.02 5.96 16 10 N -0.72 -15.04 5.55 -66.41 -0.37 -15.40 16 11 C 0.70 13.74 8.57 -86.92 -0.74 12.99 16 12 O -0.60 -14.31 16.34 5.29 0.09 -14.22 16 13 N -0.76 -10.65 5.56 -65.23 -0.36 -11.01 16 14 C 0.15 1.64 5.67 -4.04 -0.02 1.61 16 15 C -0.14 -1.23 5.52 -26.73 -0.15 -1.37 16 16 C 0.14 0.99 6.51 -4.04 -0.03 0.97 16 17 N -0.37 -3.42 3.68 -61.36 -0.23 -3.65 16 18 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 19 C -0.28 -2.16 10.80 -40.01 -0.43 -2.59 16 20 C 0.04 0.37 12.03 -17.36 -0.21 0.16 16 21 N -0.29 -3.28 12.42 30.63 0.38 -2.90 16 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 24 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 25 H 0.39 7.17 8.34 -40.82 -0.34 6.83 16 26 H 0.39 4.53 8.49 -40.82 -0.35 4.19 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -35.47 306.77 -6.83 -42.31 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.83 Total: 4.59 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.24 Total: 4.64 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.20 Total: -58.90 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.47 -6.83 -42.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.551 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds