Wall clock time and date at job start Mon Mar 30 2020 00:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 N 1.46903 * 109.47308 * 120.00209 * 2 1 3 5 5 C 1.46897 * 111.00211 * 169.62830 * 4 2 1 6 6 C 1.50698 * 109.46972 * 293.95399 * 5 4 2 7 7 H 1.08006 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00150 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00047 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47331 * 59.99454 * 10 8 6 12 12 H 1.48499 * 109.47297 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46774 * 299.99573 * 10 8 6 14 14 C 1.46908 * 110.99758 * 293.58241 * 4 2 1 15 15 C 1.50694 * 109.47114 * 160.18687 * 14 4 2 16 16 C 1.38630 * 120.79950 * 105.39563 * 15 14 4 17 17 C 1.38193 * 119.18846 * 179.97438 * 16 15 14 18 18 N 1.31869 * 120.82480 * 0.02624 * 17 16 15 19 19 C 1.31839 * 121.75070 * 359.97438 * 18 17 16 20 20 C 1.38465 * 120.72382 * 359.73706 * 19 18 17 21 21 F 1.35101 * 120.44588 * 180.26716 * 20 19 18 22 22 H 1.08998 * 109.47183 * 306.55321 * 1 2 3 23 23 H 1.09004 * 109.47198 * 66.55622 * 1 2 3 24 24 H 1.09003 * 109.47199 * 186.55225 * 1 2 3 25 25 H 1.08998 * 109.47372 * 240.00165 * 2 1 3 26 26 H 1.08996 * 109.46942 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47323 * 299.99884 * 3 2 1 28 28 H 1.08998 * 109.46930 * 59.99895 * 3 2 1 29 29 H 1.08996 * 109.47373 * 53.95070 * 5 4 2 30 30 H 1.08998 * 109.46913 * 173.95333 * 5 4 2 31 31 H 0.96992 * 120.00306 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.46845 * 280.18476 * 14 4 2 33 33 H 1.09003 * 109.46931 * 40.18150 * 14 4 2 34 34 H 1.07999 * 120.41006 * 359.95968 * 16 15 14 35 35 H 1.08006 * 119.58585 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.63521 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4670 -0.9297 1.1164 6 6 3.7537 -1.9003 -0.0002 7 1 2.9419 -2.3012 -0.5890 8 6 5.0523 -2.2773 -0.2695 9 7 6.0409 -1.7895 0.4478 10 14 5.4078 -3.4799 -1.6540 11 1 4.9252 -2.9124 -2.9387 12 1 6.8709 -3.7197 -1.7379 13 1 4.7099 -4.7630 -1.3864 14 6 1.6779 0.0564 2.4162 15 6 1.7415 -0.8645 3.6073 16 6 2.7958 -0.7924 4.5047 17 6 2.8204 -1.6527 5.5859 18 7 1.8577 -2.5348 5.7696 19 6 0.8392 -2.6335 4.9383 20 6 0.7428 -1.8014 3.8357 21 9 -0.3061 -1.9038 2.9904 22 1 -0.3633 0.6120 0.8255 23 1 -0.3634 0.4089 -0.9429 24 1 -0.3634 -1.0210 0.1173 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9789 0.0122 0.9193 30 1 3.8217 -1.3456 2.0594 31 1 6.9544 -2.0544 0.2581 32 1 2.3862 0.8739 2.5506 33 1 0.6699 0.4607 2.3228 34 1 3.5882 -0.0730 4.3605 35 1 3.6385 -1.6018 6.2893 36 1 0.0692 -3.3682 5.1219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519624802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:54 Heat of formation + Delta-G solvation = -11.050336 kcal Electronic energy + Delta-G solvation = -19044.245632 eV Core-core repulsion = 16056.858749 eV Total energy + Delta-G solvation = -2987.386882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.52777 -39.80686 -37.77248 -33.18337 -32.82138 -30.61795 -30.33947 -27.65018 -26.62398 -25.04043 -23.26267 -22.28880 -21.81697 -18.89852 -17.16856 -16.93072 -16.33630 -16.18742 -15.45728 -14.98953 -14.62042 -14.10913 -13.93396 -13.56897 -13.29549 -13.14702 -12.91999 -12.62654 -12.14898 -12.01613 -11.79884 -11.44884 -11.29147 -10.95843 -10.74970 -10.66595 -10.49326 -10.11926 -9.88904 -9.44053 -9.26282 -9.14452 -8.62976 -8.45348 -7.30101 -6.05374 -4.05926 1.23073 1.37007 3.31820 3.35974 3.39244 3.87285 4.37336 4.41317 4.67412 4.77224 4.93819 5.10706 5.21154 5.31041 5.49304 5.64024 5.68063 5.74046 5.91981 5.95632 6.03475 6.06242 6.13512 6.22686 6.28163 6.40622 6.51206 6.75440 6.83730 6.90574 7.25865 7.34498 7.76335 8.04275 8.04672 8.16062 8.49587 9.00784 9.57998 11.05416 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.008087 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.456693 B = 3461.598262 C = 4242.485307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 C -0.181 4.181 4 N -0.523 5.523 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.086 3.914 15 C -0.051 4.051 16 C -0.133 4.133 17 C 0.082 3.918 18 N -0.467 5.467 19 C 0.062 3.938 20 C 0.070 3.930 21 F -0.125 7.125 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.045 0.955 29 H -0.003 1.003 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 4.502 6.035 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.247 5.247 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.042 4.042 15 C -0.060 4.060 16 C -0.153 4.153 17 C -0.075 4.075 18 N -0.176 5.176 19 C -0.096 4.096 20 C 0.048 3.952 21 F -0.103 7.103 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.014 0.986 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.953 3.477 6.755 11.742 hybrid contribution 0.669 0.631 -1.687 1.921 sum -8.284 4.108 5.068 10.545 Atomic orbital electron populations 1.21879 0.95966 1.01960 1.00094 1.21603 0.93789 0.91993 0.95243 1.22453 1.02488 0.98436 1.00635 1.62348 1.19445 1.44115 0.98777 1.19796 0.80090 0.95664 0.97875 1.21094 0.92151 1.25644 1.15627 0.91993 1.24955 0.96212 0.96567 0.96717 1.69933 0.99450 1.44350 1.40019 0.86594 0.76984 0.81667 0.82389 1.20280 1.21359 1.20192 1.20976 1.01172 0.92956 0.89082 1.20493 0.92878 0.96140 0.96490 1.22056 0.97851 1.00802 0.94583 1.22689 0.96644 0.91478 0.96639 1.67630 1.01530 1.20032 1.28396 1.22763 0.97601 0.98452 0.90794 1.18583 0.87087 0.98653 0.90842 1.91498 1.54195 1.95119 1.69511 0.93720 0.93211 0.91970 0.88670 0.91829 0.93124 0.93624 0.98559 0.95211 0.92904 0.93736 0.90274 0.84146 0.82380 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.02 37.16 0.34 -1.86 16 2 C 0.08 1.53 2.78 -67.71 -0.19 1.34 16 3 C -0.18 -3.03 8.53 37.16 0.32 -2.72 16 4 N -0.52 -10.81 4.36 -229.52 -1.00 -11.81 16 5 C 0.19 4.75 4.43 -4.98 -0.02 4.73 16 6 C -0.51 -13.97 8.36 -34.44 -0.29 -14.25 16 7 H 0.06 1.71 7.18 -52.48 -0.38 1.33 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.09 1.50 3.48 -4.97 -0.02 1.49 16 15 C -0.05 -0.87 4.85 -104.26 -0.51 -1.37 16 16 C -0.13 -2.08 9.16 -39.45 -0.36 -2.44 16 17 C 0.08 1.21 11.18 -17.55 -0.20 1.02 16 18 N -0.47 -7.41 10.36 -13.20 -0.14 -7.55 16 19 C 0.06 0.95 11.17 -17.46 -0.20 0.76 16 20 C 0.07 1.18 7.29 -39.28 -0.29 0.89 16 21 F -0.12 -2.13 16.88 2.25 0.04 -2.09 16 22 H 0.04 0.64 6.53 -51.93 -0.34 0.30 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.99 6.64 -51.93 -0.34 1.65 16 26 H 0.06 1.21 6.59 -51.93 -0.34 0.87 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 29 H 0.00 -0.09 6.42 -51.93 -0.33 -0.42 16 30 H 0.03 0.80 6.94 -51.93 -0.36 0.44 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 0.76 7.19 -51.93 -0.37 0.38 16 33 H 0.08 1.26 5.97 -51.93 -0.31 0.95 16 34 H 0.14 2.02 8.05 -52.49 -0.42 1.59 16 35 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 36 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -29.89 298.57 -7.19 -37.08 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.80 Total: -0.37 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.50 Total: -10.92 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.40 Total: -44.80 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.89 -7.19 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519624802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.031 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds