Wall clock time and date at job start Mon Mar 30 2020 00:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46986 * 2 1 4 4 N 1.46903 * 109.47308 * 120.00209 * 2 1 3 5 5 C 1.46897 * 111.00211 * 169.62830 * 4 2 1 6 6 C 1.50698 * 109.46972 * 293.95399 * 5 4 2 7 7 H 1.08006 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00150 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00047 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47331 * 59.99454 * 10 8 6 12 12 H 1.48499 * 109.47297 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46774 * 299.99573 * 10 8 6 14 14 C 1.46908 * 110.99758 * 293.58241 * 4 2 1 15 15 C 1.50694 * 109.47114 * 160.18687 * 14 4 2 16 16 C 1.38630 * 120.79950 * 105.39563 * 15 14 4 17 17 C 1.38193 * 119.18846 * 179.97438 * 16 15 14 18 18 N 1.31869 * 120.82480 * 0.02624 * 17 16 15 19 19 C 1.31839 * 121.75070 * 359.97438 * 18 17 16 20 20 C 1.38465 * 120.72382 * 359.73706 * 19 18 17 21 21 F 1.35101 * 120.44588 * 180.26716 * 20 19 18 22 22 H 1.08998 * 109.47183 * 306.55321 * 1 2 3 23 23 H 1.09004 * 109.47198 * 66.55622 * 1 2 3 24 24 H 1.09003 * 109.47199 * 186.55225 * 1 2 3 25 25 H 1.08998 * 109.47372 * 240.00165 * 2 1 3 26 26 H 1.08996 * 109.46942 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47323 * 299.99884 * 3 2 1 28 28 H 1.08998 * 109.46930 * 59.99895 * 3 2 1 29 29 H 1.08996 * 109.47373 * 53.95070 * 5 4 2 30 30 H 1.08998 * 109.46913 * 173.95333 * 5 4 2 31 31 H 0.96992 * 120.00306 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.46845 * 280.18476 * 14 4 2 33 33 H 1.09003 * 109.46931 * 40.18150 * 14 4 2 34 34 H 1.07999 * 120.41006 * 359.95968 * 16 15 14 35 35 H 1.08006 * 119.58585 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.63521 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4670 -0.9297 1.1164 6 6 3.7537 -1.9003 -0.0002 7 1 2.9419 -2.3012 -0.5890 8 6 5.0523 -2.2773 -0.2695 9 7 6.0409 -1.7895 0.4478 10 14 5.4078 -3.4799 -1.6540 11 1 4.9252 -2.9124 -2.9387 12 1 6.8709 -3.7197 -1.7379 13 1 4.7099 -4.7630 -1.3864 14 6 1.6779 0.0564 2.4162 15 6 1.7415 -0.8645 3.6073 16 6 2.7958 -0.7924 4.5047 17 6 2.8204 -1.6527 5.5859 18 7 1.8577 -2.5348 5.7696 19 6 0.8392 -2.6335 4.9383 20 6 0.7428 -1.8014 3.8357 21 9 -0.3061 -1.9038 2.9904 22 1 -0.3633 0.6120 0.8255 23 1 -0.3634 0.4089 -0.9429 24 1 -0.3634 -1.0210 0.1173 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9789 0.0122 0.9193 30 1 3.8217 -1.3456 2.0594 31 1 6.9544 -2.0544 0.2581 32 1 2.3862 0.8739 2.5506 33 1 0.6699 0.4607 2.3228 34 1 3.5882 -0.0730 4.3605 35 1 3.6385 -1.6018 6.2893 36 1 0.0692 -3.3682 5.1219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519624802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:53 Heat of formation + Delta-G solvation = -29.607665 kcal Electronic energy + Delta-G solvation = -19045.050338 eV Core-core repulsion = 16056.858749 eV Total energy + Delta-G solvation = -2988.191588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.82061 -41.05669 -39.30092 -34.91587 -34.46948 -32.01724 -31.75934 -29.36090 -27.98197 -26.70633 -24.52424 -24.08234 -23.18196 -20.43213 -18.44762 -18.43893 -18.06104 -17.63444 -16.80380 -16.66850 -16.19095 -15.75811 -15.14288 -15.10321 -14.65355 -14.57250 -14.28940 -14.03962 -13.95305 -13.34680 -13.19133 -13.03019 -12.80004 -12.69523 -12.56280 -12.32275 -12.04564 -11.74440 -11.56227 -11.28085 -10.62003 -10.59561 -10.51885 -9.86546 -8.96500 -8.19814 -6.27511 0.01370 0.09863 1.38640 1.40745 1.48376 2.38967 2.64311 3.12789 3.14823 3.33597 3.52220 3.67799 3.79569 3.96496 4.11220 4.32658 4.35194 4.47959 4.55826 4.59703 4.77998 4.82979 4.83498 4.92113 5.00290 5.04794 5.16217 5.23076 5.27970 5.44728 5.54930 5.67283 5.69531 6.08556 6.39620 6.64115 6.83630 6.87881 7.40930 8.90396 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.008087 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.456693 B = 3461.598262 C = 4242.485307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.076 3.924 3 C -0.172 4.172 4 N -0.532 5.532 5 C 0.211 3.789 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.090 3.910 15 C -0.070 4.070 16 C -0.142 4.142 17 C 0.085 3.915 18 N -0.479 5.479 19 C 0.065 3.935 20 C 0.054 3.946 21 F -0.129 7.129 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.063 0.937 29 H -0.026 1.026 30 H 0.005 0.995 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.190 0.810 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 4.493 6.062 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 C -0.230 4.230 4 N -0.256 5.256 5 C 0.085 3.915 6 C -0.560 4.560 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.199 1.199 14 C -0.037 4.037 15 C -0.079 4.079 16 C -0.162 4.162 17 C -0.071 4.071 18 N -0.187 5.187 19 C -0.093 4.093 20 C 0.032 3.968 21 F -0.108 7.108 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.082 0.918 29 H -0.008 1.008 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.166 0.834 35 H 0.206 0.794 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.951 3.477 6.780 12.533 hybrid contribution 0.952 0.656 -1.651 2.015 sum -8.999 4.133 5.129 11.152 Atomic orbital electron populations 1.21773 0.93099 1.01773 1.02074 1.21661 0.95940 0.92418 0.93166 1.22339 1.00385 0.97644 1.02680 1.62232 1.16425 1.46087 1.00876 1.19360 0.82701 0.93796 0.95647 1.21408 0.92209 1.26062 1.16279 0.92615 1.25767 0.96087 0.98263 0.99069 1.70045 0.99755 1.45606 1.41528 0.85598 0.76941 0.79375 0.79700 1.19303 1.20787 1.19889 1.20993 1.02047 0.92855 0.87852 1.20628 0.93778 0.96744 0.96798 1.22243 0.97730 1.01405 0.94842 1.23191 0.96962 0.90379 0.96587 1.67731 1.01942 1.20414 1.28642 1.23184 0.97921 0.98267 0.89940 1.18745 0.87180 0.99304 0.91526 1.91479 1.54341 1.95215 1.69754 0.92170 0.90816 0.93168 0.91717 0.94913 0.90795 0.91813 1.00801 0.97684 0.92816 0.93534 0.88447 0.83426 0.79362 0.79559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.02 71.98 0.65 -3.12 16 2 C 0.08 2.81 2.78 44.91 0.12 2.93 16 3 C -0.17 -5.59 8.53 71.98 0.61 -4.98 16 4 N -0.53 -22.13 4.36 -880.06 -3.84 -25.97 16 5 C 0.21 10.82 4.43 85.56 0.38 11.20 16 6 C -0.52 -29.32 8.36 25.60 0.21 -29.11 16 7 H 0.06 3.13 7.18 -2.91 -0.02 3.11 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 10 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 14 C 0.09 3.09 3.48 85.55 0.30 3.39 16 15 C -0.07 -2.38 4.85 -19.63 -0.10 -2.47 16 16 C -0.14 -4.38 9.16 22.35 0.20 -4.18 16 17 C 0.09 2.39 11.18 84.68 0.95 3.34 16 18 N -0.48 -14.42 10.36 -195.66 -2.03 -16.45 16 19 C 0.06 1.90 11.17 84.75 0.95 2.84 16 20 C 0.05 1.78 7.29 22.47 0.16 1.94 16 21 F -0.13 -4.29 16.88 44.97 0.76 -3.53 16 22 H 0.06 1.56 6.53 -2.39 -0.02 1.54 16 23 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.75 6.64 -2.39 -0.02 2.74 16 26 H 0.03 1.25 6.59 -2.39 -0.02 1.24 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.82 6.75 -2.39 -0.02 1.80 16 29 H -0.03 -1.40 6.42 -2.39 -0.02 -1.42 16 30 H 0.01 0.28 6.94 -2.39 -0.02 0.27 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.05 1.57 7.19 -2.39 -0.02 1.55 16 33 H 0.10 2.94 5.97 -2.39 -0.01 2.93 16 34 H 0.15 4.23 8.05 -2.91 -0.02 4.20 16 35 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -64.35 298.57 3.19 -61.16 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.07 Total: 10.33 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 4.91 Total: -17.38 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -5.58 Total: -97.15 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.76 Total: -3.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.35 3.19 -61.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519624802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.552 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds