Wall clock time and date at job start Sun Mar 29 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47372 * 180.02562 * 16 14 13 18 18 N 1.30719 * 125.52267 * 269.69827 * 17 16 14 19 19 N 1.40444 * 106.78707 * 179.85967 * 18 17 16 20 20 H 0.96997 * 126.82070 * 180.16273 * 19 18 17 21 21 C 1.34425 * 106.35772 * 0.39693 * 19 18 17 22 22 C 1.50695 * 125.96351 * 179.74101 * 21 19 18 23 23 N 1.30831 * 108.07697 * 359.76006 * 21 19 18 24 24 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 28 28 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 29 29 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 30 30 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 31 31 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 32 32 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 33 33 H 1.09005 * 109.47404 * 269.99631 * 22 21 19 34 34 H 1.09001 * 109.47685 * 29.99933 * 22 21 19 35 35 H 1.08999 * 109.47406 * 150.00180 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3384 3.8769 2.5624 18 7 -1.6522 5.0767 2.1491 19 7 -3.0530 5.1674 2.1932 20 1 -3.5940 5.9335 1.9456 21 6 -3.4949 3.9836 2.6517 22 6 -4.9357 3.6035 2.8766 23 7 -2.4557 3.2190 2.8691 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.9548 0.8552 -0.5318 30 1 2.2902 2.1166 1.9978 31 1 0.0991 2.6017 3.4901 32 1 0.7539 4.1436 2.8885 33 1 -5.2255 3.8636 3.8948 34 1 -5.5679 4.1415 2.1703 35 1 -5.0559 2.5305 2.7276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:58 Heat of formation + Delta-G solvation = 35.285336 kcal Electronic energy + Delta-G solvation = -18535.923999 eV Core-core repulsion = 15570.466344 eV Total energy + Delta-G solvation = -2965.457655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12835 -39.08349 -35.29165 -33.57049 -32.42105 -32.37245 -31.51972 -29.64530 -27.84923 -26.85829 -22.44740 -21.87866 -21.05849 -19.97429 -19.45484 -17.96808 -17.70374 -16.42992 -15.57483 -15.35161 -14.92328 -14.48220 -13.82710 -13.57472 -13.24662 -13.02101 -12.87672 -12.67631 -12.48176 -12.29571 -11.94763 -11.81676 -11.41167 -10.84819 -10.63717 -10.39563 -10.11511 -10.00319 -9.84784 -9.56351 -9.49892 -9.10199 -8.96723 -8.30699 -8.03090 -6.54797 -4.18493 1.58445 2.59498 2.84723 3.29826 3.41776 3.47495 3.62436 3.84935 4.19545 4.44779 4.54194 4.69640 5.10965 5.15076 5.20079 5.44553 5.49283 5.55030 5.67354 6.14848 6.16969 6.25388 6.34854 6.42764 6.76323 6.86204 7.00767 7.01721 7.12805 7.42127 7.46681 7.69882 8.11431 8.26739 8.51644 8.74618 9.03502 9.50384 10.85959 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.005091 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.851630 B = 5499.106286 C = 5673.538154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.615 4.615 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.281 1.281 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.542 6.542 16 C -0.055 4.055 17 C 0.261 3.739 18 N -0.306 5.306 19 N -0.485 5.485 20 H 0.437 0.563 21 C 0.278 3.722 22 C -0.075 4.075 23 N -0.530 5.530 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.394 0.606 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 6.062 9.743 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.653 4.653 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.420 6.420 16 C -0.097 4.097 17 C -0.022 4.022 18 N -0.135 5.135 19 N -0.203 5.203 20 H 0.282 0.718 21 C 0.000 4.000 22 C -0.134 4.134 23 N -0.259 5.259 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.227 0.773 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.226 5.665 7.400 19.585 hybrid contribution -0.196 1.098 1.837 2.149 sum -17.422 6.764 9.236 20.846 Atomic orbital electron populations 1.21874 0.97308 0.98806 1.02021 1.22357 0.93833 0.99758 1.01803 1.19039 0.95715 0.88547 0.82228 0.94193 1.22108 0.89737 1.49376 1.04120 0.91988 1.25655 0.97526 0.92378 1.01158 1.70873 1.07071 1.41049 1.34306 0.84123 0.75498 0.77714 0.75907 1.20959 1.19483 1.20693 1.46171 1.14348 1.56170 1.18207 1.19973 0.82825 0.79371 0.88472 1.90683 1.50768 1.59471 1.41055 1.20004 0.88704 1.01776 0.99248 1.23327 0.95333 0.88143 0.95438 1.77999 0.88857 1.21113 1.25495 1.47914 1.05821 1.14500 1.52102 0.71759 1.24330 0.97717 0.83504 0.94471 1.20359 0.85147 1.04585 1.03356 1.70293 0.96784 1.32425 1.26403 0.95161 0.93047 0.93275 0.91397 0.93014 0.92125 0.77347 0.86533 0.86914 0.89184 0.90014 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.53 37.15 0.32 -2.71 16 2 C -0.14 -3.18 5.28 -26.73 -0.14 -3.32 16 3 C 0.25 6.03 1.82 -69.08 -0.13 5.90 16 4 H 0.04 1.07 6.26 -51.93 -0.32 0.75 16 5 C -0.62 -16.77 9.01 -34.44 -0.31 -17.08 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -27.00 13.69 55.43 0.76 -26.24 16 9 Si 1.04 25.57 26.27 -169.99 -4.47 21.11 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.20 5.67 56.52 0.32 -5.88 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.70 -14.25 5.03 -54.94 -0.28 -14.53 16 14 C 0.51 10.04 6.42 -10.99 -0.07 9.97 16 15 O -0.54 -12.64 13.17 5.56 0.07 -12.57 16 16 C -0.05 -0.83 6.33 -29.04 -0.18 -1.01 16 17 C 0.26 4.36 6.63 -156.85 -1.04 3.32 16 18 N -0.31 -4.99 12.80 32.42 0.41 -4.58 16 19 N -0.48 -5.83 7.45 32.62 0.24 -5.59 16 20 H 0.44 3.39 8.96 -182.34 -1.63 1.75 16 21 C 0.28 3.37 8.24 -155.70 -1.28 2.09 16 22 C -0.08 -0.49 10.51 36.00 0.38 -0.11 16 23 N -0.53 -8.44 11.19 -8.16 -0.09 -8.53 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.10 5.63 -51.92 -0.29 0.80 16 26 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 27 H 0.07 1.62 4.74 -51.92 -0.25 1.38 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 30 H 0.39 6.97 8.53 -40.82 -0.35 6.62 16 31 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -35.94 293.22 -7.34 -43.28 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.87 Total: 5.16 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.55 Total: -1.93 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 1.05 Total: -59.47 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -4.47 Total: 21.11 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.94 -7.34 -43.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.567 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds