Wall clock time and date at job start Sun Mar 29 2020 22:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47143 * 2 1 4 4 C 1.42894 * 114.00142 * 182.07859 * 3 2 1 5 5 H 1.09000 * 109.47215 * 333.66240 * 4 3 2 6 6 C 1.50702 * 109.47338 * 213.66640 * 4 3 2 7 7 O 1.21292 * 119.99945 * 354.99476 * 6 4 3 8 8 N 1.34778 * 120.00474 * 175.00161 * 6 4 3 9 9 C 1.37089 * 120.00266 * 179.97438 * 8 6 4 10 10 H 1.08000 * 120.00502 * 9.22399 * 9 8 6 11 11 C 1.38956 * 119.99810 * 189.23207 * 9 8 6 12 12 N 1.31401 * 120.00368 * 29.23771 * 11 9 8 13 13 Si 1.86801 * 119.99624 * 209.23909 * 11 9 8 14 14 H 1.48503 * 109.47295 * 59.99855 * 13 11 9 15 15 H 1.48506 * 109.47182 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47514 * 299.99937 * 13 11 9 17 17 C 1.46502 * 119.99306 * 359.97438 * 8 6 4 18 18 C 1.47206 * 109.47081 * 91.00707 * 17 8 6 19 19 N 6.35325 * 146.61392 * 324.39919 * 2 1 3 20 20 C 1.52997 * 109.47450 * 93.66420 * 4 3 2 21 21 C 1.53000 * 117.51490 * 353.30060 * 20 4 3 22 22 C 1.52995 * 60.00144 * 107.48397 * 21 20 4 23 23 H 1.08994 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47213 * 300.00001 * 1 2 3 25 25 H 1.09002 * 109.47099 * 59.99874 * 1 2 3 26 26 H 1.08998 * 109.47213 * 239.99999 * 2 1 3 27 27 H 1.09002 * 109.47099 * 120.00126 * 2 1 3 28 28 H 0.97003 * 120.00474 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.46734 * 211.00376 * 17 8 6 30 30 H 1.08994 * 109.47716 * 331.00179 * 17 8 6 31 31 H 1.09001 * 115.55347 * 207.60077 * 20 4 3 32 32 H 1.09001 * 117.49837 * 214.97137 * 21 20 4 33 33 H 1.08999 * 117.50234 * 359.97438 * 21 20 4 34 34 H 1.09011 * 117.49712 * 252.51364 * 22 21 20 35 35 H 1.08999 * 117.50217 * 107.49023 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4301 1.4604 -0.0473 5 1 3.8802 0.5656 0.3827 6 6 3.8644 2.6694 0.7406 7 8 3.0335 3.4164 1.2124 8 7 5.1762 2.9207 0.9209 9 6 5.5713 4.0207 1.6372 10 1 4.8413 4.6017 2.1812 11 6 6.9111 4.3884 1.6632 12 7 7.6878 4.1137 0.6395 13 14 7.6080 5.2731 3.1535 14 1 7.4472 4.4179 4.3569 15 1 9.0501 5.5520 2.9341 16 1 6.8811 6.5523 3.3547 17 6 6.1799 2.0181 0.3513 18 6 6.5497 2.4829 -0.9956 19 7 6.8349 2.8426 -2.0352 20 6 3.8818 1.6101 -1.5014 21 6 2.8191 1.4553 -2.5912 22 6 3.3906 2.8379 -2.2710 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 8.6232 4.3701 0.6578 29 1 7.0643 2.0099 0.9884 30 1 5.7685 1.0108 0.2879 31 1 4.8853 1.2463 -1.7218 32 1 3.1235 0.9897 -3.5286 33 1 1.7979 1.2464 -2.2724 34 1 2.7454 3.5389 -1.7413 35 1 4.0711 3.2819 -2.9976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599243998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:10 Heat of formation + Delta-G solvation = -6.901140 kcal Electronic energy + Delta-G solvation = -19436.026668 eV Core-core repulsion = 16436.446919 eV Total energy + Delta-G solvation = -2999.579749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.67442 -37.57687 -35.96600 -35.38756 -34.22162 -31.93813 -31.13361 -28.03443 -27.16915 -24.50961 -22.78583 -21.89483 -20.81747 -19.28767 -17.99654 -16.74884 -16.35248 -16.11552 -15.81390 -14.87195 -14.69065 -14.23842 -13.85848 -13.48078 -13.09752 -12.74764 -12.40315 -12.21351 -12.00448 -11.91161 -11.62003 -11.34365 -11.14345 -11.10395 -10.96444 -10.89855 -10.55965 -10.41880 -10.27188 -10.00696 -9.94816 -9.35218 -9.21254 -8.34632 -8.09361 -6.54759 -3.92893 3.10932 3.22599 3.24724 3.45924 3.71404 3.94591 4.01417 4.08822 4.25271 4.80488 4.94682 4.97915 5.17003 5.18649 5.33402 5.36082 5.40967 5.50275 5.57579 5.64022 5.75438 5.86617 5.98409 6.01426 6.07720 6.20247 6.32873 6.43707 6.49662 6.64593 7.40912 7.48248 7.90650 8.29685 8.80442 9.00797 9.20170 9.75396 10.51197 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.007708 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.315300 B = 3631.660292 C = 4296.047350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.109 3.891 5 H 0.077 0.923 6 C 0.461 3.539 7 O -0.554 6.554 8 N -0.438 5.438 9 C -0.319 4.319 10 H 0.112 0.888 11 C 0.036 3.964 12 N -0.867 5.867 13 Si 0.921 3.079 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.219 3.781 18 C 0.251 3.749 19 N -0.470 5.470 20 C -0.182 4.182 21 C -0.171 4.171 22 C -0.155 4.155 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.274 0.726 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -10.622 -1.138 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.047 3.953 5 H 0.095 0.905 6 C 0.248 3.752 7 O -0.435 6.435 8 N -0.160 5.160 9 C -0.446 4.446 10 H 0.129 0.871 11 C -0.169 4.169 12 N -0.505 5.505 13 Si 0.747 3.253 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.091 3.909 18 C -0.067 4.067 19 N -0.150 5.150 20 C -0.201 4.201 21 C -0.208 4.208 22 C -0.192 4.192 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.195 -9.501 -2.458 11.104 hybrid contribution 0.836 0.165 0.941 1.270 sum -4.359 -9.335 -1.517 10.414 Atomic orbital electron populations 1.21708 0.93977 1.01678 1.03222 1.22561 0.95486 0.84622 0.99874 1.88029 1.19183 1.25159 1.94493 1.21365 0.82476 0.98147 0.93293 0.90523 1.19679 0.82885 0.87967 0.84654 1.90558 1.50912 1.50069 1.51975 1.43595 1.02463 1.23397 1.46523 1.19661 0.93187 1.06664 1.25069 0.87068 1.25183 0.96467 0.97746 0.97460 1.69920 1.07848 1.46478 1.26250 0.86068 0.77523 0.79789 0.81886 1.19697 1.21075 1.19778 1.18803 0.95273 0.91111 0.85712 1.28999 0.91791 0.92342 0.93579 1.80894 1.10134 1.08857 1.15134 1.22848 0.99177 1.05898 0.92189 1.22908 0.98684 1.01026 0.98133 1.22799 1.03035 0.90914 1.02423 0.91484 0.91740 0.92026 0.93340 0.93567 0.91528 0.86056 0.90102 0.87086 0.89486 0.88126 0.88343 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.05 0.67 5.70 37.16 0.21 0.89 16 3 O -0.35 -6.32 8.23 -55.09 -0.45 -6.78 16 4 C 0.11 1.99 2.15 -27.88 -0.06 1.93 16 5 H 0.08 1.17 6.76 -51.93 -0.35 0.82 16 6 C 0.46 10.73 6.62 -10.98 -0.07 10.65 16 7 O -0.55 -15.18 16.10 -14.31 -0.23 -15.41 16 8 N -0.44 -10.25 2.58 -117.93 -0.30 -10.56 16 9 C -0.32 -8.29 9.38 -14.93 -0.14 -8.43 16 10 H 0.11 3.08 7.35 -52.49 -0.39 2.70 16 11 C 0.04 0.88 4.76 -17.47 -0.08 0.80 16 12 N -0.87 -21.68 9.39 55.50 0.52 -21.16 16 13 Si 0.92 19.52 29.64 -169.99 -5.04 14.49 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 C 0.22 4.31 4.75 -6.82 -0.03 4.28 16 18 C 0.25 5.43 10.07 -20.74 -0.21 5.22 16 19 N -0.47 -10.87 18.51 42.17 0.78 -10.09 16 20 C -0.18 -3.15 4.02 -90.62 -0.36 -3.52 16 21 C -0.17 -2.60 9.38 -26.73 -0.25 -2.85 16 22 C -0.15 -2.89 9.78 -26.73 -0.26 -3.15 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.56 7.50 -51.93 -0.39 0.17 16 27 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 29 H 0.12 2.41 6.57 -51.93 -0.34 2.07 16 30 H 0.08 1.23 5.92 -51.93 -0.31 0.92 16 31 H 0.11 1.90 5.43 -51.93 -0.28 1.62 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.49 6.31 -51.93 -0.33 1.16 16 34 H 0.10 2.06 8.11 -51.92 -0.42 1.64 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -30.89 293.78 -5.65 -36.54 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.48 Total: 3.99 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.88 Total: 4.55 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.00 Total: -41.80 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.68 Total: -22.19 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.04 Total: 14.49 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.89 -5.65 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599243998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds