Wall clock time and date at job start Mon Mar 30 2020 00:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47088 * 2 1 4 4 N 1.46500 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.34834 * 126.59680 * 125.33825 * 4 3 2 6 6 C 1.36667 * 106.82586 * 180.15199 * 5 4 3 7 7 C 1.47439 * 125.77708 * 179.83958 * 6 5 4 8 8 O 1.21627 * 120.00137 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00103 * 179.97438 * 7 6 5 10 10 C 1.36952 * 120.00355 * 175.10735 * 9 7 6 11 11 H 1.08002 * 119.99819 * 326.34178 * 10 9 7 12 12 C 1.38988 * 120.00468 * 146.33923 * 10 9 7 13 13 N 1.31403 * 120.00405 * 156.33022 * 12 10 9 14 14 Si 1.86802 * 119.99901 * 336.33851 * 12 10 9 15 15 H 1.48502 * 109.46900 * 95.32308 * 14 12 10 16 16 H 1.48498 * 109.47059 * 215.32307 * 14 12 10 17 17 H 1.48498 * 109.47198 * 335.32826 * 14 12 10 18 18 C 1.46504 * 119.99928 * 355.11340 * 9 7 6 19 19 C 1.52993 * 109.47335 * 84.80577 * 18 9 7 20 20 N 1.34420 * 108.44090 * 359.57514 * 6 5 4 21 21 N 1.28752 * 109.53097 * 0.26315 * 20 6 5 22 22 H 1.09005 * 109.47137 * 300.00026 * 1 2 3 23 23 H 1.09003 * 109.47681 * 59.99964 * 1 2 3 24 24 H 1.09001 * 109.47531 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46764 * 240.00176 * 2 1 3 26 26 H 1.08998 * 109.47275 * 119.99774 * 2 1 3 27 27 H 1.08999 * 109.47514 * 59.99726 * 3 2 1 28 28 H 1.09011 * 109.46981 * 300.00284 * 3 2 1 29 29 H 1.08002 * 126.58720 * 359.97438 * 5 4 3 30 30 H 0.96992 * 120.00359 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47274 * 204.80966 * 18 9 7 32 32 H 1.09003 * 109.46706 * 324.80503 * 18 9 7 33 33 H 1.09003 * 109.47075 * 185.89879 * 19 18 9 34 34 H 1.09001 * 109.47225 * 305.89946 * 19 18 9 35 35 H 1.08997 * 109.47297 * 65.90015 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3084 2.0689 -0.8839 6 6 5.5947 1.7987 -0.5094 7 6 6.8102 2.2775 -1.1929 8 8 6.7153 2.9778 -2.1828 9 7 8.0264 1.9392 -0.7209 10 6 9.1532 2.2991 -1.4109 11 1 9.1356 2.3401 -2.4900 12 6 10.3196 2.6117 -0.7227 13 7 11.4847 2.5023 -1.3205 14 14 10.2310 3.1869 1.0523 15 1 10.4354 2.0286 1.9588 16 1 11.2885 4.2002 1.2976 17 1 8.8986 3.7892 1.3116 18 6 8.1430 1.1863 0.5305 19 6 7.9964 -0.3090 0.2416 20 7 5.5640 1.0273 0.5910 21 7 4.3411 0.7964 0.9209 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6766 1.9564 -0.8901 29 1 3.9956 2.6666 -1.7273 30 1 12.2986 2.7201 -0.8400 31 1 9.1181 1.3758 0.9791 32 1 7.3589 1.5019 1.2188 33 1 7.9782 -0.8606 1.1816 34 1 7.0676 -0.4849 -0.3010 35 1 8.8391 -0.6468 -0.3616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611226927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:21 Heat of formation + Delta-G solvation = 55.996226 kcal Electronic energy + Delta-G solvation = -18780.925534 eV Core-core repulsion = 15816.365971 eV Total energy + Delta-G solvation = -2964.559563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.14841 -40.32549 -37.15835 -36.81662 -34.39606 -33.46595 -31.78010 -31.33622 -28.20468 -27.02840 -24.66745 -24.01068 -23.49485 -22.32277 -20.87024 -18.97517 -18.44076 -17.72895 -17.19556 -16.88029 -16.19622 -15.87477 -15.65643 -15.43375 -14.83341 -14.56775 -14.40103 -14.27626 -13.79781 -13.50461 -13.23844 -12.99726 -12.89637 -12.73636 -12.54710 -12.42730 -12.12053 -11.84911 -11.73354 -11.47821 -11.12914 -11.09303 -10.59082 -10.20384 -9.78393 -8.56290 -6.11067 0.23807 0.77486 1.20126 1.21483 1.32273 1.42511 2.15297 2.35651 2.61463 2.97774 3.36363 3.44711 3.87069 3.87184 4.10458 4.12755 4.20449 4.26536 4.46261 4.50345 4.54277 4.62151 4.75330 4.85405 4.99341 5.09993 5.14086 5.20357 5.35979 5.40410 5.50590 5.59631 6.00079 6.47879 6.84438 7.03573 7.25092 7.80082 8.60082 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.041672 B = 0.005587 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.746300 B = 5010.035360 C = 5223.717016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.348 5.348 5 C 0.098 3.902 6 C -0.108 4.108 7 C 0.529 3.471 8 O -0.609 6.609 9 N -0.455 5.455 10 C -0.334 4.334 11 H 0.057 0.943 12 C 0.023 3.977 13 N -0.896 5.896 14 Si 0.941 3.059 15 H -0.243 1.243 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.086 3.914 19 C -0.133 4.133 20 N -0.222 5.222 21 N -0.089 5.089 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.230 0.770 30 H 0.283 0.717 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.597 -4.167 6.989 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.007 4.007 4 N -0.134 5.134 5 C -0.059 4.059 6 C -0.248 4.248 7 C 0.318 3.682 8 O -0.494 6.494 9 N -0.174 5.174 10 C -0.462 4.462 11 H 0.075 0.925 12 C -0.181 4.181 13 N -0.533 5.533 14 Si 0.765 3.235 15 H -0.168 1.168 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.036 4.036 19 C -0.192 4.192 20 N -0.096 5.096 21 N -0.069 5.069 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.154 0.846 29 H 0.246 0.754 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.417 -4.710 7.770 23.265 hybrid contribution 0.578 0.919 -0.631 1.255 sum -20.839 -3.791 7.139 22.352 Atomic orbital electron populations 1.21671 0.92056 1.03092 1.03307 1.21782 0.98286 0.94245 1.02903 1.22632 0.69978 1.00640 1.07463 1.50773 1.09885 1.33718 1.19005 1.23632 0.88970 0.96912 0.96403 1.21495 0.95041 1.08580 0.99634 1.17313 0.82531 0.82469 0.85908 1.90605 1.86734 1.42470 1.29590 1.43736 1.04483 1.46881 1.22282 1.18736 0.87646 1.48075 0.91726 0.92491 1.25984 0.93801 0.95021 1.03292 1.69843 0.98421 1.44126 1.40906 0.85959 0.78463 0.79307 0.79758 1.16774 1.20611 1.19314 1.22151 1.01384 0.93617 0.86485 1.21818 1.00595 0.94533 1.02219 1.74775 1.12897 1.11070 1.10825 1.81761 0.93649 1.18312 1.13151 0.91267 0.91024 0.91781 0.92140 0.91727 0.86746 0.84606 0.75411 0.90693 0.92442 0.88489 0.89607 0.93271 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.91 71.98 0.71 -0.29 16 2 C -0.13 -1.63 6.14 30.59 0.19 -1.44 16 3 C 0.11 1.35 6.54 86.38 0.56 1.92 16 4 N -0.35 -8.28 3.69 -347.01 -1.28 -9.57 16 5 C 0.10 2.82 11.28 83.86 0.95 3.77 16 6 C -0.11 -4.29 6.38 40.81 0.26 -4.03 16 7 C 0.53 26.99 7.58 86.67 0.66 27.65 16 8 O -0.61 -34.57 16.72 -4.12 -0.07 -34.64 16 9 N -0.45 -24.28 2.25 -639.23 -1.44 -25.72 16 10 C -0.33 -20.45 9.40 84.07 0.79 -19.66 16 11 H 0.06 3.97 7.88 -2.91 -0.02 3.95 16 12 C 0.02 1.33 5.28 84.94 0.45 1.78 16 13 N -0.90 -53.87 13.96 21.67 0.30 -53.57 16 14 Si 0.94 44.39 24.96 68.60 1.71 46.10 16 15 H -0.24 -10.25 6.64 99.48 0.66 -9.59 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 C 0.09 3.89 4.33 86.38 0.37 4.26 16 19 C -0.13 -5.30 9.49 71.98 0.68 -4.61 16 20 N -0.22 -8.31 7.29 -50.01 -0.36 -8.68 16 21 N -0.09 -2.77 13.64 37.02 0.51 -2.27 16 22 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 23 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.14 0.80 8.08 -2.38 -0.02 0.78 16 29 H 0.23 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.06 2.65 3.11 -2.39 -0.01 2.64 16 32 H 0.10 4.13 5.65 -2.39 -0.01 4.11 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 1.97 6.68 -2.39 -0.02 1.95 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.15 292.61 6.04 -71.12 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.05 Total: 7.90 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.63 Total: 9.33 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -2.28 Total: -99.80 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.07 Total: -34.64 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.71 Total: 46.10 kcal Total: -77.15 6.04 -71.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611226927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.111 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds