Wall clock time and date at job start Sun Mar 29 2020 22:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47490 * 125.01392 * 6 5 4 8 8 O 1.20825 * 120.00078 * 0.02562 * 7 6 5 9 9 O 1.34232 * 120.00022 * 179.97438 * 7 6 5 10 10 C 1.45200 * 116.99820 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46920 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46764 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99753 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00170 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47230 * 89.99868 * 17 15 13 19 19 H 1.48501 * 109.47227 * 209.99596 * 17 15 13 20 20 H 1.48495 * 109.47200 * 329.99893 * 17 15 13 21 21 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 22 22 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 23 23 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 24 24 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 25 25 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 26 26 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47294 * 245.01541 * 6 5 4 28 28 H 1.09000 * 109.47417 * 5.01101 * 6 5 4 29 29 H 1.08995 * 109.47086 * 300.00217 * 10 9 7 30 30 H 1.09004 * 109.46989 * 60.00196 * 10 9 7 31 31 H 1.09005 * 109.46637 * 299.99763 * 11 10 9 32 32 H 1.08994 * 109.47096 * 59.99619 * 11 10 9 33 33 H 1.08997 * 109.46894 * 299.99364 * 12 11 10 34 34 H 1.08995 * 109.47180 * 60.00108 * 12 11 10 35 35 H 0.97006 * 120.00085 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 6 4.6736 -2.5778 1.1625 8 8 3.7294 -2.5384 1.9153 9 8 5.6544 -3.4722 1.3622 10 6 5.5145 -4.3601 2.5026 11 6 6.7194 -5.3009 2.5672 12 6 6.5716 -6.2369 3.7685 13 6 7.7587 -7.1632 3.8324 14 1 8.5401 -7.0917 3.0903 15 6 7.8467 -8.1026 4.8378 16 7 6.8950 -8.1900 5.7412 17 14 9.3177 -9.2512 4.9167 18 1 10.3859 -8.6315 5.7416 19 1 8.9065 -10.5410 5.5271 20 1 9.8302 -9.4941 3.5443 21 7 2.2892 -1.1327 -0.0002 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.9281 2.1193 -0.0007 26 1 4.4211 1.2964 -0.0011 27 1 4.7850 -2.1885 -0.9328 28 1 5.6484 -1.0131 0.0875 29 1 5.4648 -3.7706 3.4180 30 1 4.6011 -4.9456 2.3973 31 1 6.7694 -5.8904 1.6517 32 1 7.6325 -4.7152 2.6725 33 1 6.5213 -5.6477 4.6841 34 1 5.6586 -6.8227 3.6626 35 1 6.9571 -8.8506 6.4488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782385623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:41 Heat of formation + Delta-G solvation = -23.064235 kcal Electronic energy + Delta-G solvation = -17338.283182 eV Core-core repulsion = 14338.002549 eV Total energy + Delta-G solvation = -3000.280633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39928 -39.95351 -36.39708 -34.07892 -33.92749 -31.72470 -30.77785 -29.93680 -27.12327 -25.97749 -23.33104 -21.45490 -21.24076 -20.31042 -19.52948 -17.39873 -17.10756 -16.44507 -16.33497 -15.78230 -15.42159 -14.50983 -14.43909 -14.21644 -13.77643 -13.24438 -13.10153 -12.70728 -12.61232 -12.42089 -12.13142 -11.82835 -11.77329 -10.93767 -10.74876 -10.62170 -10.57541 -10.29952 -10.23301 -9.66063 -9.50651 -9.38929 -9.12619 -8.74838 -8.35898 -6.00608 -4.03530 1.71309 2.30432 2.46089 2.49951 3.17994 3.33143 3.39170 3.43012 4.19743 4.46010 4.53198 4.64487 4.88079 5.00082 5.10415 5.14587 5.27467 5.35308 5.47508 5.59063 5.65952 5.71872 5.81437 6.08899 6.39957 6.60168 6.60380 6.81261 6.93403 7.04872 7.55913 7.64232 7.75689 7.97969 8.07583 8.39475 9.02894 9.60579 11.10906 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.062309 B = 0.002969 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.262967 B = 9427.427614 C = 9717.938599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.049 3.951 4 C -0.263 4.263 5 C 0.076 3.924 6 C -0.031 4.031 7 C 0.457 3.543 8 O -0.498 6.498 9 O -0.360 6.360 10 C 0.070 3.930 11 C -0.109 4.109 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.263 5.263 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.174 0.826 26 H 0.150 0.850 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 19.833 -13.808 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.096 4.096 4 C -0.292 4.292 5 C -0.091 4.091 6 C -0.070 4.070 7 C 0.298 3.702 8 O -0.385 6.385 9 O -0.276 6.276 10 C -0.003 4.003 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.085 5.085 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.191 0.809 26 H 0.168 0.832 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.847 18.718 -13.393 25.444 hybrid contribution 1.061 0.101 0.360 1.125 sum -9.786 18.819 -13.033 24.896 Atomic orbital electron populations 1.21854 0.74212 1.04344 1.03537 1.48551 1.06715 1.03836 1.56750 1.22501 0.91094 0.93471 1.02564 1.21340 0.97265 0.93828 1.16763 1.21554 0.92660 0.93545 1.01365 1.19609 0.95392 0.94860 0.97172 1.23251 0.80558 0.80401 0.85994 1.90694 1.32923 1.68990 1.45862 1.86475 1.46541 1.44856 1.49776 1.23469 1.01367 0.90383 0.85117 1.21758 0.94673 0.96316 1.01871 1.19056 0.97674 0.93292 0.91354 1.21184 1.06125 1.16932 1.11640 0.92405 1.25035 0.96362 0.97498 0.95632 1.69970 1.32942 1.35522 1.14993 0.86542 0.82716 0.80193 0.78250 1.20622 1.21220 1.19803 1.77457 1.01206 1.07338 1.22523 0.90661 0.89520 0.89249 0.80898 0.83238 0.86161 0.85774 0.91646 0.91605 0.92142 0.92137 0.96264 0.96244 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.85 0.69 1.35 16 2 N -0.38 -4.15 4.01 -68.16 -0.27 -4.42 16 3 C 0.05 0.44 11.49 -17.22 -0.20 0.25 16 4 C -0.26 -2.69 10.72 -40.01 -0.43 -3.12 16 5 C 0.08 0.98 6.01 -82.41 -0.50 0.48 16 6 C -0.03 -0.35 6.39 -29.04 -0.19 -0.54 16 7 C 0.46 7.43 7.95 36.01 0.29 7.71 16 8 O -0.50 -9.87 15.31 -18.75 -0.29 -10.16 16 9 O -0.36 -6.24 10.22 -39.26 -0.40 -6.64 16 10 C 0.07 1.35 5.47 37.16 0.20 1.55 16 11 C -0.11 -2.32 5.53 -26.73 -0.15 -2.47 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 N -0.26 -3.88 11.93 33.67 0.40 -3.48 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 26 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.12 1.00 8.12 -51.93 -0.42 0.58 16 29 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -36.23 311.88 -6.01 -42.24 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -5.04 Total: -4.53 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.83 Total: -7.99 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.86 Total: -34.41 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.69 Total: -16.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.23 -6.01 -42.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782385623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.175 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds