Wall clock time and date at job start Sun Mar 29 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35048 * 126.39694 * 2 1 4 4 N 1.30499 * 108.69491 * 180.27008 * 3 2 1 5 5 C 1.34128 * 109.26028 * 359.76417 * 4 3 2 6 6 C 1.34671 * 108.01866 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.58956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 85.02112 * 7 6 5 9 9 O 1.45199 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.34230 * 116.99614 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.47116 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47172 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00258 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99838 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47167 * 60.00066 * 18 16 14 20 20 H 1.48503 * 109.46708 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46854 * 299.99852 * 18 16 14 22 22 H 1.09005 * 109.46654 * 270.12055 * 1 2 3 23 23 H 1.09001 * 109.46811 * 30.11554 * 1 2 3 24 24 H 1.08994 * 109.47304 * 150.11955 * 1 2 3 25 25 H 1.08001 * 125.65451 * 0.07448 * 3 2 1 26 26 H 1.08004 * 125.98860 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47120 * 325.01865 * 7 6 5 28 28 H 1.08998 * 109.46862 * 205.02667 * 7 6 5 29 29 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 30 30 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 31 31 H 1.09000 * 109.47303 * 300.00327 * 12 10 9 32 32 H 1.09003 * 109.46535 * 60.00663 * 12 10 9 33 33 H 1.09000 * 109.47151 * 300.00236 * 13 12 10 34 34 H 1.09003 * 109.46860 * 60.00013 * 13 12 10 35 35 H 0.96999 * 120.00252 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5428 0.0049 8 6 1.8136 -3.0662 1.4424 9 8 1.3882 -4.4545 1.4453 10 6 1.3152 -5.0669 2.6376 11 8 1.5970 -4.4628 3.6453 12 6 0.8807 -6.5076 2.7192 13 6 0.8826 -6.9588 4.1812 14 6 0.4488 -8.3997 4.2628 15 1 0.1972 -8.9398 3.3620 16 6 0.3739 -9.0288 5.4874 17 7 0.6817 -8.3716 6.5842 18 14 -0.1632 -10.8151 5.5885 19 1 0.7766 -11.6595 4.8082 20 1 -0.1614 -11.2529 7.0075 21 1 -1.5324 -10.9525 5.0303 22 1 -0.3633 0.0022 1.0277 23 1 -0.3633 0.8890 -0.5156 24 1 -0.3633 -0.8910 -0.5119 25 1 1.9335 2.1145 0.0011 26 1 4.4368 -1.2612 -0.0087 27 1 2.5323 -3.1370 -0.5872 28 1 0.8375 -2.6181 -0.4250 29 1 1.1175 -2.4720 2.0345 30 1 2.8124 -2.9909 1.8722 31 1 -0.1245 -6.6078 2.3098 32 1 1.5700 -7.1280 2.1463 33 1 1.8877 -6.8586 4.5911 34 1 0.1932 -6.3384 4.7538 35 1 0.6287 -8.8141 7.4457 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813087975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:02 Heat of formation + Delta-G solvation = -42.110109 kcal Electronic energy + Delta-G solvation = -17506.757962 eV Core-core repulsion = 14505.651437 eV Total energy + Delta-G solvation = -3001.106524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.34453 -39.95582 -36.40999 -34.37877 -33.60878 -33.22165 -31.14066 -28.41273 -27.28785 -26.05175 -23.74002 -21.98558 -21.67757 -20.21895 -19.72033 -17.52090 -17.09178 -16.44497 -16.42103 -15.94839 -15.25787 -14.97758 -14.49449 -14.16055 -13.89377 -13.37465 -13.31146 -12.94964 -12.93904 -12.71779 -12.25053 -11.80973 -11.73282 -11.21050 -10.95647 -10.68227 -10.38927 -10.18138 -10.06042 -9.95677 -9.84746 -9.58192 -9.21157 -8.60590 -8.39155 -6.02951 -4.08198 1.70544 2.46684 2.79703 2.89748 3.13138 3.31636 3.36494 3.38513 4.34985 4.40993 4.45854 4.49020 4.65814 4.73564 4.88928 5.01526 5.12760 5.23433 5.32317 5.39488 5.48984 5.60031 5.79912 6.09174 6.11991 6.17086 6.49245 6.61663 6.89914 6.91269 7.64241 7.71239 7.82679 7.96217 8.23017 8.38585 8.98768 9.55933 11.08025 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.058591 B = 0.003110 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.773509 B = 9000.441239 C = 9054.431485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C 0.180 3.820 4 N -0.494 5.494 5 C -0.017 4.017 6 C -0.024 4.024 7 C -0.040 4.040 8 C 0.070 3.930 9 O -0.368 6.368 10 C 0.457 3.543 11 O -0.504 6.504 12 C -0.103 4.103 13 C 0.033 3.967 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.205 0.795 26 H 0.171 0.829 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 15.642 -15.733 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.142 5.142 3 C -0.102 4.102 4 N -0.212 5.212 5 C -0.165 4.165 6 C -0.139 4.139 7 C -0.079 4.079 8 C -0.005 4.005 9 O -0.286 6.286 10 C 0.300 3.700 11 O -0.391 6.391 12 C -0.140 4.140 13 C -0.004 4.004 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.222 0.778 26 H 0.189 0.811 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.489 16.368 -15.232 22.365 hybrid contribution -1.037 -1.206 0.283 1.616 sum -1.526 15.162 -14.949 21.347 Atomic orbital electron populations 1.22104 0.76497 1.04831 1.04047 1.45338 1.07714 1.06724 1.54429 1.24960 0.85648 0.93418 1.06127 1.70295 1.19415 1.11991 1.19477 1.22158 0.95792 0.91124 1.07450 1.20958 0.91378 0.89225 1.12322 1.19858 1.03390 0.88199 0.96437 1.22830 1.00944 0.80169 0.96511 1.86522 1.79753 1.26511 1.35802 1.24791 0.73785 0.91137 0.80269 1.90646 1.45036 1.66869 1.36517 1.21772 1.02363 0.85233 1.04659 1.19018 0.98782 0.95910 0.86725 1.21116 1.46391 0.96321 0.92980 0.92339 1.25024 0.95291 0.98257 0.95747 1.69980 1.47966 1.36809 0.98022 0.86595 0.79193 0.84806 0.77021 1.20131 1.21246 1.20173 0.90193 0.89231 0.89375 0.77809 0.81141 0.88214 0.90170 0.91894 0.90908 0.88969 0.88868 0.95562 0.95637 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.00 59.85 0.66 1.01 16 2 N -0.46 -4.11 3.15 -121.37 -0.38 -4.49 16 3 C 0.18 1.72 12.56 -90.37 -1.14 0.58 16 4 N -0.49 -6.23 11.25 -14.66 -0.16 -6.40 16 5 C -0.02 -0.20 11.79 -17.81 -0.21 -0.41 16 6 C -0.02 -0.26 6.21 -81.60 -0.51 -0.76 16 7 C -0.04 -0.39 5.93 -27.89 -0.17 -0.56 16 8 C 0.07 0.92 5.45 37.16 0.20 1.13 16 9 O -0.37 -5.81 10.22 -39.26 -0.40 -6.21 16 10 C 0.46 8.89 7.96 36.01 0.29 9.18 16 11 O -0.50 -11.54 15.73 -18.75 -0.29 -11.83 16 12 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 13 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 14 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 0.40 7.11 -51.93 -0.37 0.04 16 25 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.67 7.09 -51.93 -0.37 0.31 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -34.94 309.53 -7.35 -42.29 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.92 Total: -3.32 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.56 Total: -4.78 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.19 Total: -37.11 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.70 Total: -18.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.94 -7.35 -42.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds