Wall clock time and date at job start Sun Mar 29 2020 23:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47299 * 239.99886 * 3 2 1 5 5 H 1.48496 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47017 * 120.00227 * 3 2 1 7 7 C 1.38810 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99733 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00330 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99968 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47163 * 180.02562 * 10 9 7 12 12 N 1.46491 * 109.47169 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99975 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00140 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00236 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47197 * 180.02562 * 15 13 12 17 17 N 1.46501 * 109.47323 * 180.02562 * 16 15 13 18 18 C 1.36890 * 126.39537 * 270.03108 * 17 16 15 19 19 C 1.34669 * 106.81617 * 179.97438 * 18 17 16 20 20 N 1.34134 * 108.02026 * 0.02562 * 19 18 17 21 21 C 1.30493 * 109.25480 * 0.02562 * 20 19 18 22 22 H 0.97004 * 120.00325 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99809 * 0.02562 * 9 7 2 24 24 H 1.09001 * 109.47088 * 60.01112 * 10 9 7 25 25 H 1.08997 * 109.47707 * 300.00294 * 10 9 7 26 26 H 1.08993 * 109.46689 * 60.00089 * 11 10 9 27 27 H 1.08997 * 109.46722 * 300.00496 * 11 10 9 28 28 H 0.97000 * 120.00217 * 0.02562 * 12 11 10 29 29 H 1.09006 * 109.47101 * 60.00122 * 15 13 12 30 30 H 1.09002 * 109.47241 * 300.00434 * 15 13 12 31 31 H 1.09002 * 109.47343 * 60.00448 * 16 15 13 32 32 H 1.08998 * 109.47519 * 299.99826 * 16 15 13 33 33 H 1.07996 * 126.59258 * 359.97438 * 18 17 16 34 34 H 1.08002 * 125.99042 * 180.26007 * 19 18 17 35 35 H 1.08006 * 125.64594 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8198 -0.0021 12 7 1.7963 -6.0884 -0.0026 13 6 1.1224 -7.2556 -0.0025 14 8 -0.0904 -7.2556 -0.0024 15 6 1.8759 -8.5607 -0.0036 16 6 0.8817 -9.7236 -0.0039 17 7 1.6141 -10.9924 -0.0043 18 6 2.0207 -11.6952 -1.1065 19 6 2.6553 -12.7940 -0.6556 20 7 2.6364 -12.7633 0.6853 21 6 2.0136 -11.6875 1.0823 22 1 -0.4851 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0005 24 1 2.6853 -3.7150 0.8879 25 1 2.6841 -3.7142 -0.8921 26 1 0.4369 -4.7614 -0.8917 27 1 0.4375 -4.7625 0.8881 28 1 2.7663 -6.0884 -0.0023 29 1 2.5033 -8.6188 0.8859 30 1 2.5019 -8.6181 -0.8941 31 1 0.2547 -9.6654 -0.8936 32 1 0.2554 -9.6665 0.8864 33 1 1.8627 -11.4211 -2.1391 34 1 3.1045 -13.5631 -1.2665 35 1 1.8468 -11.3999 2.1099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132079880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:49 Heat of formation + Delta-G solvation = 33.800132 kcal Electronic energy + Delta-G solvation = -17180.108259 eV Core-core repulsion = 14214.586200 eV Total energy + Delta-G solvation = -2965.522058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28670 -39.82085 -35.96099 -35.00629 -33.96330 -31.53605 -30.72037 -29.63119 -27.82664 -24.97982 -23.40639 -21.58995 -21.58534 -21.17170 -20.40614 -18.02760 -17.41022 -16.62320 -16.11361 -15.98666 -15.12381 -14.88439 -14.60829 -14.30852 -14.15938 -13.73723 -13.38117 -13.28283 -13.23145 -12.89961 -12.75066 -11.81825 -11.51352 -11.18694 -10.90314 -10.84539 -10.28536 -10.22360 -10.14734 -9.89610 -9.75678 -9.11217 -8.93960 -8.79133 -7.06418 -5.85263 -3.16564 1.77338 2.38941 2.46739 2.93369 3.18275 3.38839 3.43408 3.44687 4.27191 4.29443 4.46597 4.48957 4.55454 4.74303 4.95534 5.00280 5.20240 5.34667 5.41549 5.43159 5.44792 5.67328 5.86144 5.99579 6.04009 6.34384 6.46807 6.60372 6.61209 6.89076 7.39996 7.59644 7.81582 8.08102 8.32154 9.43446 9.97293 10.31886 11.37156 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.073719 B = 0.002710 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.730593 B =10331.362157 C =10510.019758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.720 5.720 13 C 0.515 3.485 14 O -0.543 6.543 15 C -0.157 4.157 16 C 0.120 3.880 17 N -0.459 5.459 18 C -0.056 4.056 19 C -0.033 4.033 20 N -0.498 5.498 21 C 0.181 3.819 22 H 0.258 0.742 23 H 0.386 0.614 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.401 0.599 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -21.366 -1.020 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.014 4.014 12 N -0.370 5.370 13 C 0.299 3.701 14 O -0.420 6.420 15 C -0.198 4.198 16 C -0.003 4.003 17 N -0.141 5.141 18 C -0.189 4.189 19 C -0.181 4.181 20 N -0.216 5.216 21 C -0.101 4.101 22 H 0.068 0.932 23 H 0.220 0.780 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.191 0.809 34 H 0.186 0.814 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.353 -21.673 -0.508 22.111 hybrid contribution 0.332 1.665 -0.581 1.794 sum 4.685 -20.008 -1.089 20.578 Atomic orbital electron populations 1.69654 1.05176 1.26061 1.56962 1.24789 0.95579 0.97874 1.02511 0.86213 0.78505 0.83210 0.77895 1.21148 1.21564 1.21146 1.19140 0.91008 0.83837 1.43794 0.91070 1.42177 1.05996 0.99544 1.89757 1.20756 0.93459 0.85695 0.98457 1.21624 0.95497 0.81563 1.02710 1.45933 1.10604 1.06054 1.74456 1.20220 0.88064 0.85157 0.76617 1.90752 1.13787 1.87705 1.49787 1.21988 0.99624 0.92372 1.05791 1.21623 0.93084 0.79001 1.06566 1.45668 1.42545 1.18849 1.07066 1.22802 1.06660 0.96492 0.92930 1.22323 1.05111 0.99354 0.91288 1.70304 1.19559 1.19579 1.12171 1.25061 1.00584 0.90635 0.93849 0.93244 0.77989 0.95779 0.95810 0.91130 0.91116 0.76466 0.88010 0.88085 0.87968 0.87736 0.80912 0.81444 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.77 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.08 5.60 -59.90 -0.34 -18.42 16 10 C 0.14 2.69 6.37 -4.04 -0.03 2.67 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 12 N -0.72 -8.43 5.56 -60.30 -0.33 -8.77 16 13 C 0.51 5.89 7.83 -10.99 -0.09 5.80 16 14 O -0.54 -8.39 15.98 5.55 0.09 -8.30 16 15 C -0.16 -1.12 6.02 -27.88 -0.17 -1.28 16 16 C 0.12 0.88 5.44 -4.04 -0.02 0.86 16 17 N -0.46 -3.72 2.75 -118.58 -0.33 -4.05 16 18 C -0.06 -0.45 11.58 -16.56 -0.19 -0.64 16 19 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 20 N -0.50 -5.67 11.25 -14.66 -0.16 -5.83 16 21 C 0.18 1.63 12.56 -90.38 -1.14 0.49 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.39 10.14 7.67 -40.82 -0.31 9.83 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.40 3.58 8.47 -40.82 -0.35 3.23 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.10 0.76 8.10 -51.93 -0.42 0.33 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.20 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -34.41 309.54 -7.67 -42.08 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.85 Total: 7.08 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.11 Total: 1.75 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.44 Total: -64.21 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.41 -7.67 -42.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132079880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.880 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds