Wall clock time and date at job start Mon Mar 30 2020 00:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 N 1.46897 * 109.47183 * 174.87293 * 3 2 1 5 5 C 1.46903 * 110.99795 * 199.71910 * 4 3 2 6 6 C 1.50699 * 109.46999 * 66.05102 * 5 4 3 7 7 H 1.08001 * 120.00174 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00080 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00158 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47187 * 59.99568 * 10 8 6 12 12 H 1.48503 * 109.47229 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47046 * 299.99395 * 10 8 6 14 14 C 1.46897 * 110.99778 * 75.76860 * 4 3 2 15 15 C 1.50699 * 109.47140 * 199.74930 * 14 4 3 16 16 C 1.38752 * 120.77495 * 264.43555 * 15 14 4 17 17 C 1.38108 * 119.22359 * 180.02562 * 16 15 14 18 18 N 1.31932 * 120.79894 * 0.02562 * 17 16 15 19 19 C 1.32039 * 121.68748 * 359.68431 * 18 17 16 20 20 F 1.35098 * 119.64705 * 180.29035 * 19 18 17 21 21 C 1.38509 * 120.77374 * 84.45483 * 15 14 4 22 22 H 1.08995 * 109.47293 * 299.99692 * 1 2 3 23 23 H 1.08994 * 109.47149 * 60.00298 * 1 2 3 24 24 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47123 * 239.99624 * 2 1 3 26 26 H 1.09007 * 109.46908 * 119.99699 * 2 1 3 27 27 H 1.09008 * 109.47268 * 54.87119 * 3 2 1 28 28 H 1.09002 * 109.46712 * 294.87501 * 3 2 1 29 29 H 1.09000 * 109.46624 * 186.04675 * 5 4 3 30 30 H 1.08997 * 109.47212 * 306.04558 * 5 4 3 31 31 H 0.96995 * 120.00497 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47294 * 79.74824 * 14 4 3 33 33 H 1.08996 * 109.47439 * 319.74861 * 14 4 3 34 34 H 1.08001 * 120.38745 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.59975 * 180.02562 * 17 16 15 36 36 H 1.07999 * 120.43240 * 359.95654 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5038 1.4443 0.1238 5 6 3.9910 2.7493 0.5906 6 6 3.5118 2.9898 1.9990 7 1 2.9057 2.2477 2.4973 8 6 3.8473 4.1572 2.6514 9 7 4.5858 5.0606 2.0447 10 14 3.2540 4.4550 4.3974 11 1 3.7741 3.3851 5.2862 12 1 3.7474 5.7737 4.8697 13 1 1.7693 4.4429 4.4245 14 6 4.1399 1.0684 -1.1459 15 6 5.5519 0.6114 -0.8843 16 6 6.6176 1.4908 -1.0107 17 6 7.8987 1.0376 -0.7638 18 7 8.1160 -0.2152 -0.4119 19 6 7.1266 -1.0791 -0.2762 20 9 7.3957 -2.3508 0.0917 21 6 5.8161 -0.6965 -0.5126 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6036 1.9822 0.8405 28 1 1.7536 1.9291 -0.9324 29 1 5.0807 2.7583 0.5710 30 1 3.6093 3.5343 -0.0622 31 1 4.8221 5.8817 2.5038 32 1 4.1546 1.9296 -1.8139 33 1 3.5759 0.2588 -1.6091 34 1 6.4475 2.5174 -1.2995 35 1 8.7326 1.7170 -0.8599 36 1 5.0106 -1.4078 -0.4044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139833489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:57 Heat of formation + Delta-G solvation = -14.672063 kcal Electronic energy + Delta-G solvation = -18412.758042 eV Core-core repulsion = 15425.214110 eV Total energy + Delta-G solvation = -2987.543932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.75808 -39.87405 -37.23475 -33.55509 -32.99712 -31.59801 -30.58979 -27.69947 -26.44731 -24.25107 -23.42297 -22.02681 -21.25011 -19.94254 -17.32007 -17.01815 -16.40669 -15.81230 -15.79755 -15.07025 -14.70653 -14.57872 -14.11328 -13.78500 -13.51315 -13.16308 -12.86639 -12.52644 -12.11873 -12.09132 -11.77054 -11.54212 -11.38649 -11.09170 -10.85000 -10.77678 -10.39815 -10.10963 -9.93517 -9.52516 -9.38209 -9.21559 -8.73290 -8.48314 -7.41025 -6.08733 -4.09647 1.21005 1.37103 3.29936 3.34469 3.37429 3.76524 3.88393 4.38419 4.67327 4.80850 5.05289 5.19850 5.27434 5.30744 5.36019 5.48978 5.54936 5.72594 5.76353 5.89076 5.99641 6.02950 6.07792 6.18671 6.19983 6.37865 6.55515 6.63044 6.75375 6.88211 7.18386 7.23543 7.72130 7.86845 7.98518 8.09245 8.43960 8.97010 9.54563 11.02088 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.007299 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.044492 B = 3835.273454 C = 4960.098978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.532 5.532 5 C 0.190 3.810 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.085 3.915 15 C 0.012 3.988 16 C -0.166 4.166 17 C 0.131 3.869 18 N -0.523 5.523 19 C 0.296 3.704 20 F -0.120 7.120 21 C -0.173 4.173 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.020 0.980 29 H 0.035 0.965 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -8.232 -7.799 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.256 5.256 5 C 0.065 3.935 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.043 4.043 15 C 0.004 3.996 16 C -0.187 4.187 17 C -0.025 4.025 18 N -0.238 5.238 19 C 0.142 3.858 20 F -0.100 7.100 21 C -0.195 4.195 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.025 -8.722 -7.246 11.339 hybrid contribution -1.166 0.962 0.397 1.562 sum -1.141 -7.760 -6.849 10.413 Atomic orbital electron populations 1.21728 0.96423 1.00880 1.01666 1.21561 0.94645 0.97823 1.01746 1.22068 0.88339 0.95548 1.00699 1.62122 1.04799 1.34780 1.23914 1.19823 0.96256 0.82109 0.95273 1.21092 1.32478 1.02676 0.98520 0.91905 1.24960 0.95259 0.96007 0.98206 1.69927 1.37377 1.08795 1.37580 0.86584 0.79033 0.77338 0.84627 1.20165 1.21314 1.20253 1.21080 0.90239 0.99767 0.93231 1.20164 0.96347 0.91694 0.91424 1.22187 0.93106 1.01316 1.02061 1.22394 0.96692 0.89831 0.93569 1.66933 1.36174 1.04405 1.16308 1.18108 0.89777 0.80319 0.97565 1.91580 1.94977 1.34681 1.88722 1.21603 0.95560 0.98242 1.04099 0.92597 0.93259 0.93267 0.93134 0.91332 0.89238 0.96144 0.94688 0.99091 0.92832 0.93806 0.90442 0.83961 0.81883 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.73 5.98 -26.73 -0.16 -1.89 16 3 C 0.06 1.10 4.79 -3.83 -0.02 1.08 16 4 N -0.53 -10.55 4.34 -237.52 -1.03 -11.59 16 5 C 0.19 4.64 4.55 -4.97 -0.02 4.62 16 6 C -0.51 -13.79 8.23 -34.44 -0.28 -14.08 16 7 H 0.06 1.70 7.31 -52.49 -0.38 1.31 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 10 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.08 1.38 4.99 -4.98 -0.02 1.35 16 15 C 0.01 0.20 5.05 -104.33 -0.53 -0.33 16 16 C -0.17 -2.61 8.56 -39.44 -0.34 -2.95 16 17 C 0.13 1.98 11.18 -17.56 -0.20 1.78 16 18 N -0.52 -8.90 10.37 -13.59 -0.14 -9.04 16 19 C 0.30 4.93 8.41 -17.34 -0.15 4.79 16 20 F -0.12 -1.95 17.29 2.25 0.04 -1.92 16 21 C -0.17 -2.72 9.81 -39.36 -0.39 -3.10 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.66 6.89 -51.93 -0.36 0.31 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.81 6.58 -51.92 -0.34 1.47 16 28 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 29 H 0.04 0.91 6.38 -51.93 -0.33 0.57 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.04 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 34 H 0.14 2.12 8.01 -52.49 -0.42 1.70 16 35 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -29.51 305.83 -7.74 -37.24 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.10 Total: -1.81 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.83 Total: -8.72 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.44 Total: -45.72 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.51 -7.74 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139833489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.572 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds