Wall clock time and date at job start Mon Mar 30 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47073 * 2 1 4 4 N 1.46897 * 109.47116 * 179.72770 * 3 2 1 5 5 C 1.46897 * 111.00162 * 297.89755 * 4 3 2 6 6 C 1.50701 * 109.47324 * 293.09850 * 5 4 3 7 7 H 1.07998 * 119.99720 * 354.97995 * 6 5 4 8 8 C 1.37878 * 120.00174 * 174.97957 * 6 5 4 9 9 N 1.31520 * 119.99801 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47167 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46801 * 120.00163 * 10 8 6 13 13 H 1.48498 * 109.47214 * 239.99986 * 10 8 6 14 14 C 1.46905 * 110.99875 * 61.85263 * 4 3 2 15 15 C 1.50700 * 109.47064 * 66.04593 * 14 4 3 16 16 C 1.38150 * 119.60259 * 94.99818 * 15 14 4 17 17 C 1.38700 * 119.22338 * 180.02562 * 16 15 14 18 18 C 1.38549 * 118.44843 * 0.27738 * 17 16 15 19 19 C 1.38517 * 119.14041 * 359.45422 * 18 17 16 20 20 F 1.35098 * 119.64671 * 180.27002 * 19 18 17 21 21 N 1.31904 * 119.60066 * 275.01919 * 15 14 4 22 22 H 1.08993 * 109.47492 * 60.00028 * 1 2 3 23 23 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47066 * 299.99501 * 1 2 3 25 25 H 1.09002 * 109.47566 * 240.00365 * 2 1 3 26 26 H 1.09000 * 109.47825 * 119.99799 * 2 1 3 27 27 H 1.08995 * 109.46943 * 59.72618 * 3 2 1 28 28 H 1.09001 * 109.47064 * 299.72848 * 3 2 1 29 29 H 1.09000 * 109.46933 * 53.09912 * 5 4 3 30 30 H 1.09000 * 109.47530 * 173.09626 * 5 4 3 31 31 H 0.96998 * 119.99357 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47096 * 306.04395 * 14 4 3 33 33 H 1.09000 * 109.46928 * 186.04725 * 14 4 3 34 34 H 1.08003 * 120.38351 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.77687 * 180.02562 * 17 16 15 36 36 H 1.08004 * 120.42574 * 179.70054 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0066 5 6 4.0299 0.8029 1.2220 6 6 3.6842 1.6469 2.4216 7 1 3.2046 2.6052 2.2875 8 6 3.9803 1.1957 3.6904 9 7 4.5648 0.0289 3.8537 10 14 3.5524 2.2422 5.1774 11 1 2.9062 3.5012 4.7272 12 1 2.6186 1.4941 6.0569 13 1 4.7916 2.5630 5.9300 14 6 4.0408 0.7937 -1.1993 15 6 3.6876 1.6179 -2.4105 16 6 4.5970 2.5353 -2.9004 17 6 4.2636 3.2901 -4.0153 18 6 3.0201 3.0974 -4.5950 19 6 2.1616 2.1554 -4.0524 20 9 0.9487 1.9553 -4.6129 21 7 2.5139 1.4550 -2.9898 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6726 1.9578 0.8875 28 1 1.6806 1.9550 -0.8924 29 1 3.5836 -0.1854 1.3322 30 1 5.1130 0.7059 1.1459 31 1 4.7734 -0.2883 4.7463 32 1 3.6069 -0.2013 -1.2978 33 1 5.1247 0.7111 -1.1194 34 1 5.5562 2.6632 -2.4209 35 1 4.9555 4.0142 -4.4196 36 1 2.7255 3.6713 -5.4613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140133333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:24 Heat of formation + Delta-G solvation = -6.459485 kcal Electronic energy + Delta-G solvation = -18588.422393 eV Core-core repulsion = 15601.234585 eV Total energy + Delta-G solvation = -2987.187808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.92653 -40.13101 -37.24345 -32.90048 -32.66319 -32.25608 -30.81039 -27.46229 -26.26634 -24.25766 -23.34441 -22.10586 -22.01731 -19.32968 -17.67599 -16.82265 -16.19902 -16.07824 -16.02674 -15.06968 -14.78581 -14.40997 -14.07180 -13.69415 -13.40001 -13.17798 -12.81569 -12.64411 -12.30776 -11.92646 -11.60067 -11.24108 -11.04311 -10.95791 -10.71564 -10.65841 -10.52362 -10.00040 -9.89001 -9.68103 -9.48183 -9.19130 -8.80297 -8.42664 -7.19140 -6.02719 -4.03276 0.98980 1.17815 3.31121 3.38806 3.43667 3.57456 3.67823 4.43134 4.49792 4.75759 4.94220 5.06247 5.16459 5.33206 5.51994 5.63788 5.67989 5.75361 5.83419 5.99298 6.01465 6.09775 6.18310 6.25536 6.50514 6.54603 6.63780 6.70250 6.82556 7.07119 7.28919 7.44261 7.80538 7.80995 8.06685 8.18054 8.52767 9.04850 9.60793 11.07987 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.005653 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.826322 B = 4951.978697 C = 5450.910208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.068 3.932 4 N -0.529 5.529 5 C 0.189 3.811 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.091 3.909 15 C 0.190 3.810 16 C -0.166 4.166 17 C -0.050 4.050 18 C -0.207 4.207 19 C 0.302 3.698 20 F -0.119 7.119 21 N -0.504 5.504 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 3.894 -14.999 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C -0.060 4.060 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.038 4.038 15 C 0.052 3.948 16 C -0.186 4.186 17 C -0.076 4.076 18 C -0.229 4.229 19 C 0.148 3.852 20 F -0.098 7.098 21 N -0.220 5.220 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.958 3.659 -14.535 15.115 hybrid contribution -0.211 0.206 0.412 0.506 sum -2.169 3.864 -14.123 14.802 Atomic orbital electron populations 1.21606 0.96610 1.00496 1.01037 1.22074 0.95596 1.00071 1.01858 1.22042 0.87747 0.94964 1.01275 1.62438 1.07243 1.54120 1.01466 1.19826 0.95058 0.93682 0.85042 1.21153 1.38798 1.04237 0.89924 0.91901 1.24962 0.95440 0.95136 0.99000 1.69966 1.42444 1.19023 1.22424 0.86476 0.78044 0.80462 0.82663 1.19699 1.21139 1.21055 1.21109 1.00420 0.94755 0.87489 1.21171 0.86570 0.93136 0.93878 1.22055 1.02210 0.97120 0.97218 1.21449 0.95030 0.97113 0.94014 1.21723 0.95703 1.01456 1.04008 1.18174 0.81916 0.94024 0.91078 1.91600 1.41430 1.94133 1.82640 1.66908 1.19938 1.26531 1.08583 0.93425 0.93774 0.93065 0.92573 0.91064 0.90468 0.92528 0.97592 0.95606 0.93019 0.92970 0.89351 0.83721 0.83984 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.15 0.37 -1.96 16 2 C -0.16 -3.02 5.28 -26.73 -0.14 -3.16 16 3 C 0.07 1.39 4.89 -3.82 -0.02 1.37 16 4 N -0.53 -11.20 4.69 -237.51 -1.11 -12.31 16 5 C 0.19 4.73 4.53 -4.98 -0.02 4.71 16 6 C -0.50 -13.83 8.39 -34.44 -0.29 -14.12 16 7 H 0.06 1.74 7.37 -52.49 -0.39 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.09 1.61 5.06 -4.97 -0.03 1.58 16 15 C 0.19 3.01 5.70 -82.59 -0.47 2.54 16 16 C -0.17 -2.13 9.72 -39.44 -0.38 -2.51 16 17 C -0.05 -0.53 10.17 -39.30 -0.40 -0.93 16 18 C -0.21 -2.35 10.09 -39.36 -0.40 -2.74 16 19 C 0.30 4.38 8.41 -17.35 -0.15 4.24 16 20 F -0.12 -1.73 17.29 2.25 0.04 -1.69 16 21 N -0.50 -8.35 8.81 -9.81 -0.09 -8.43 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 26 H 0.07 1.55 6.29 -51.93 -0.33 1.22 16 27 H 0.08 1.72 6.97 -51.93 -0.36 1.35 16 28 H 0.06 1.12 6.24 -51.93 -0.32 0.80 16 29 H 0.01 0.17 6.02 -51.93 -0.31 -0.14 16 30 H 0.03 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.95 6.06 -51.93 -0.31 0.63 16 33 H 0.09 1.43 7.82 -51.93 -0.41 1.03 16 34 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -29.84 300.45 -7.78 -37.62 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.84 Total: -1.18 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.02 Total: -9.52 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.46 Total: -46.25 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.84 -7.78 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140133333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.164 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds