Wall clock time and date at job start Sun Mar 29 2020 23:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 C 1.53002 * 109.46646 * 184.63665 * 3 2 1 5 5 N 1.46503 * 109.46499 * 184.83280 * 4 3 2 6 6 C 1.36888 * 120.00142 * 95.01935 * 5 4 3 7 7 H 1.08000 * 120.00053 * 223.31711 * 6 5 4 8 8 C 1.38805 * 119.99888 * 43.32095 * 6 5 4 9 9 N 1.31579 * 119.99872 * 212.52278 * 8 6 5 10 10 Si 1.86796 * 120.00262 * 32.79652 * 8 6 5 11 11 H 1.48498 * 109.47135 * 95.02469 * 10 8 6 12 12 H 1.48503 * 109.47104 * 215.02482 * 10 8 6 13 13 H 1.48498 * 109.47316 * 335.02545 * 10 8 6 14 14 C 1.38909 * 119.99947 * 275.01331 * 5 4 3 15 15 N 1.32482 * 119.72079 * 4.99143 * 14 5 4 16 16 C 1.31890 * 121.63756 * 179.75053 * 15 14 5 17 17 C 1.50697 * 119.53711 * 180.24593 * 16 15 14 18 18 C 1.38152 * 120.91618 * 0.52795 * 16 15 14 19 19 C 1.38824 * 119.36025 * 359.73680 * 18 16 15 20 20 C 1.38531 * 118.48633 * 0.02562 * 19 18 16 21 21 F 1.35108 * 120.47720 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.46997 * 300.00310 * 1 2 3 23 23 H 1.08995 * 109.46829 * 59.99975 * 1 2 3 24 24 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46997 * 239.99690 * 2 1 3 26 26 H 1.09007 * 109.47017 * 119.99620 * 2 1 3 27 27 H 1.08996 * 109.46668 * 64.63901 * 3 2 1 28 28 H 1.08998 * 109.46682 * 304.63302 * 3 2 1 29 29 H 1.08997 * 109.47608 * 64.82884 * 4 3 2 30 30 H 1.09001 * 109.47240 * 304.82889 * 4 3 2 31 31 H 0.97000 * 120.00305 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.47212 * 270.27521 * 17 16 15 33 33 H 1.08998 * 109.47406 * 30.27721 * 17 16 15 34 34 H 1.08999 * 109.47307 * 150.27603 * 17 16 15 35 35 H 1.08000 * 120.31842 * 179.72127 * 18 16 15 36 36 H 1.08007 * 120.75804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5656 1.4440 -0.1166 5 7 4.0628 2.8172 -0.0007 6 6 4.4819 3.2933 1.2123 7 1 4.1986 4.2859 1.5300 8 6 5.2711 2.5005 2.0340 9 7 5.1657 2.5993 3.3418 10 14 6.4883 1.2987 1.2833 11 1 7.8282 1.9342 1.2069 12 1 6.5658 0.0800 2.1282 13 1 6.0384 0.9266 -0.0821 14 6 4.1090 3.6360 -1.1219 15 7 3.6110 3.2047 -2.2712 16 6 3.6305 3.9522 -3.3577 17 6 3.0456 3.4162 -4.6389 18 6 4.1850 5.2174 -3.3389 19 6 4.7232 5.7072 -2.1566 20 6 4.6846 4.9023 -1.0298 21 9 5.1971 5.3385 0.1418 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.7462 1.9317 0.9286 28 1 1.6105 1.9797 -0.8456 29 1 3.8566 1.0325 -1.0831 30 1 3.9916 0.8349 0.6807 31 1 5.7174 2.0455 3.9161 32 1 3.8186 2.8901 -5.1991 33 1 2.2328 2.7279 -4.4072 34 1 2.6623 4.2428 -5.2371 35 1 4.1999 5.8195 -4.2353 36 1 5.1627 6.6930 -2.1165 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:06 Heat of formation + Delta-G solvation = -7.722032 kcal Electronic energy + Delta-G solvation = -19072.180610 eV Core-core repulsion = 16084.938054 eV Total energy + Delta-G solvation = -2987.242556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.56889 -39.25640 -36.76956 -34.21407 -32.43284 -31.68077 -30.58105 -28.59629 -26.24131 -24.65072 -23.46971 -21.36663 -20.88046 -20.56247 -17.58910 -16.47548 -16.21291 -15.75029 -14.93612 -14.75217 -14.63870 -13.67717 -13.59347 -13.45743 -13.32820 -12.95894 -12.80831 -12.29458 -12.19576 -11.93137 -11.84049 -11.76053 -11.47355 -11.21869 -11.01407 -10.70925 -10.60323 -10.29758 -10.00116 -9.86779 -9.35637 -8.89435 -8.60936 -8.40237 -6.68201 -6.58301 -3.96886 1.98858 2.16590 3.10798 3.22559 3.29558 4.07377 4.22771 4.48522 4.83085 5.14724 5.36685 5.38414 5.38949 5.42864 5.55036 5.74850 5.88277 5.92961 5.93694 6.11979 6.14196 6.19018 6.22352 6.27824 6.31303 6.45940 6.53451 6.67804 6.73760 6.85239 6.91445 7.00305 7.45175 7.53272 8.16732 8.44985 8.75735 9.10063 9.51744 10.48845 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.011122 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.252193 B = 2517.023201 C = 3824.767767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.127 4.127 4 C 0.128 3.872 5 N -0.432 5.432 6 C -0.329 4.329 7 H 0.112 0.888 8 C 0.078 3.922 9 N -0.837 5.837 10 Si 0.855 3.145 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.257 1.257 14 C 0.357 3.643 15 N -0.547 5.547 16 C 0.164 3.836 17 C -0.095 4.095 18 C -0.266 4.266 19 C -0.075 4.075 20 C -0.027 4.027 21 F -0.125 7.125 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.276 0.724 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -1.398 -9.816 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.165 4.165 4 C 0.005 3.995 5 N -0.124 5.124 6 C -0.456 4.456 7 H 0.129 0.871 8 C -0.132 4.132 9 N -0.468 5.468 10 Si 0.679 3.321 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.181 1.181 14 C 0.116 3.884 15 N -0.269 5.269 16 C 0.022 3.978 17 C -0.152 4.152 18 C -0.292 4.292 19 C -0.101 4.101 20 C -0.055 4.055 21 F -0.104 7.104 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.451 -2.448 -9.269 10.569 hybrid contribution 1.304 0.421 0.090 1.373 sum -3.147 -2.027 -9.178 9.912 Atomic orbital electron populations 1.21737 0.96301 1.00774 1.01671 1.21463 0.95445 0.97527 1.01500 1.21890 0.96293 0.95848 1.02501 1.21580 0.93423 0.83901 1.00608 1.42640 1.55593 1.10239 1.03919 1.19192 1.32167 1.04714 0.89510 0.87116 1.25406 0.96423 0.96775 0.94600 1.69965 1.35509 1.38041 1.03327 0.87162 0.83252 0.80656 0.81041 1.20096 1.20605 1.18082 1.18892 0.92978 0.89623 0.86867 1.67065 1.25378 1.36460 0.98004 1.20687 0.93626 0.90323 0.93125 1.20584 1.00709 1.00996 0.92941 1.20980 1.11551 0.98537 0.98115 1.21124 0.98352 0.98780 0.91798 1.17793 1.08649 0.95456 0.83621 1.91489 1.85078 1.89293 1.44556 0.92884 0.92971 0.93358 0.92378 0.92303 0.91587 0.91765 0.91760 0.91822 0.91332 0.91265 0.91201 0.91439 0.86367 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.42 5.52 -26.73 -0.15 -2.56 16 4 C 0.13 2.80 3.67 -4.04 -0.01 2.79 16 5 N -0.43 -10.63 2.13 -114.98 -0.25 -10.88 16 6 C -0.33 -8.90 7.79 -15.08 -0.12 -9.02 16 7 H 0.11 3.27 6.59 -52.49 -0.35 2.93 16 8 C 0.08 2.10 4.96 -17.45 -0.09 2.02 16 9 N -0.84 -23.25 13.97 55.49 0.77 -22.47 16 10 Si 0.85 20.48 26.54 -169.99 -4.51 15.97 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.26 -6.10 6.21 56.52 0.35 -5.75 16 14 C 0.36 8.41 7.32 -154.94 -1.13 7.28 16 15 N -0.55 -11.64 9.15 -8.59 -0.08 -11.72 16 16 C 0.16 2.95 6.78 -82.60 -0.56 2.39 16 17 C -0.09 -1.26 10.16 36.00 0.37 -0.89 16 18 C -0.27 -4.56 9.73 -39.40 -0.38 -4.95 16 19 C -0.07 -1.41 10.15 -39.26 -0.40 -1.81 16 20 C -0.03 -0.63 7.19 -39.04 -0.28 -0.91 16 21 F -0.13 -3.11 13.77 2.25 0.03 -3.08 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.25 8.12 -51.93 -0.42 0.82 16 29 H 0.06 1.37 7.62 -51.93 -0.40 0.98 16 30 H 0.06 1.43 5.29 -51.93 -0.27 1.15 16 31 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -28.57 300.38 -7.32 -35.89 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.27 Total: 1.06 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.55 Total: -9.31 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.45 Total: -45.07 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.03 Total: -3.08 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.51 Total: 15.97 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.57 -7.32 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.171 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds