Wall clock time and date at job start Sun Mar 29 2020 23:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 C 1.53002 * 109.46646 * 184.63665 * 3 2 1 5 5 N 1.46503 * 109.46499 * 184.83280 * 4 3 2 6 6 C 1.36888 * 120.00142 * 95.01935 * 5 4 3 7 7 H 1.08000 * 120.00053 * 223.31711 * 6 5 4 8 8 C 1.38805 * 119.99888 * 43.32095 * 6 5 4 9 9 N 1.31579 * 119.99872 * 212.52278 * 8 6 5 10 10 Si 1.86796 * 120.00262 * 32.79652 * 8 6 5 11 11 H 1.48498 * 109.47135 * 95.02469 * 10 8 6 12 12 H 1.48503 * 109.47104 * 215.02482 * 10 8 6 13 13 H 1.48498 * 109.47316 * 335.02545 * 10 8 6 14 14 C 1.38909 * 119.99947 * 275.01331 * 5 4 3 15 15 N 1.32482 * 119.72079 * 4.99143 * 14 5 4 16 16 C 1.31890 * 121.63756 * 179.75053 * 15 14 5 17 17 C 1.50697 * 119.53711 * 180.24593 * 16 15 14 18 18 C 1.38152 * 120.91618 * 0.52795 * 16 15 14 19 19 C 1.38824 * 119.36025 * 359.73680 * 18 16 15 20 20 C 1.38531 * 118.48633 * 0.02562 * 19 18 16 21 21 F 1.35108 * 120.47720 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.46997 * 300.00310 * 1 2 3 23 23 H 1.08995 * 109.46829 * 59.99975 * 1 2 3 24 24 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46997 * 239.99690 * 2 1 3 26 26 H 1.09007 * 109.47017 * 119.99620 * 2 1 3 27 27 H 1.08996 * 109.46668 * 64.63901 * 3 2 1 28 28 H 1.08998 * 109.46682 * 304.63302 * 3 2 1 29 29 H 1.08997 * 109.47608 * 64.82884 * 4 3 2 30 30 H 1.09001 * 109.47240 * 304.82889 * 4 3 2 31 31 H 0.97000 * 120.00305 * 180.02562 * 9 8 6 32 32 H 1.09006 * 109.47212 * 270.27521 * 17 16 15 33 33 H 1.08998 * 109.47406 * 30.27721 * 17 16 15 34 34 H 1.08999 * 109.47307 * 150.27603 * 17 16 15 35 35 H 1.08000 * 120.31842 * 179.72127 * 18 16 15 36 36 H 1.08007 * 120.75804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5656 1.4440 -0.1166 5 7 4.0628 2.8172 -0.0007 6 6 4.4819 3.2933 1.2123 7 1 4.1986 4.2859 1.5300 8 6 5.2711 2.5005 2.0340 9 7 5.1657 2.5993 3.3418 10 14 6.4883 1.2987 1.2833 11 1 7.8282 1.9342 1.2069 12 1 6.5658 0.0800 2.1282 13 1 6.0384 0.9266 -0.0821 14 6 4.1090 3.6360 -1.1219 15 7 3.6110 3.2047 -2.2712 16 6 3.6305 3.9522 -3.3577 17 6 3.0456 3.4162 -4.6389 18 6 4.1850 5.2174 -3.3389 19 6 4.7232 5.7072 -2.1566 20 6 4.6846 4.9023 -1.0298 21 9 5.1971 5.3385 0.1418 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.7462 1.9317 0.9286 28 1 1.6105 1.9797 -0.8456 29 1 3.8566 1.0325 -1.0831 30 1 3.9916 0.8349 0.6807 31 1 5.7174 2.0455 3.9161 32 1 3.8186 2.8901 -5.1991 33 1 2.2328 2.7279 -4.4072 34 1 2.6623 4.2428 -5.2371 35 1 4.1999 5.8195 -4.2353 36 1 5.1627 6.6930 -2.1165 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:06 Heat of formation + Delta-G solvation = -22.994279 kcal Electronic energy + Delta-G solvation = -19072.842864 eV Core-core repulsion = 16084.938054 eV Total energy + Delta-G solvation = -2987.904810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.36473 -40.88414 -38.43424 -35.65712 -34.32173 -33.17378 -32.13196 -30.07183 -27.70255 -26.44438 -24.95967 -22.87273 -22.52658 -22.02574 -19.47157 -18.16103 -17.89626 -17.53303 -16.64588 -16.43826 -16.14346 -15.23514 -15.19998 -15.08099 -14.70695 -14.60308 -14.42026 -13.82291 -13.60092 -13.45127 -13.30165 -13.16070 -12.87975 -12.81568 -12.65003 -12.13807 -12.03716 -11.91314 -11.73281 -11.41013 -11.10110 -10.68933 -10.23184 -10.11765 -8.62147 -8.41655 -5.99994 0.39870 0.59008 1.18453 1.28803 1.36425 2.14423 2.47621 2.73289 3.07055 3.66046 3.77346 3.99225 4.03072 4.10935 4.28817 4.34482 4.42135 4.58590 4.66228 4.81735 4.86295 4.93161 4.95166 4.97492 5.04115 5.09132 5.18462 5.31389 5.32970 5.39240 5.44653 5.49072 5.59662 5.88030 6.16471 6.61007 7.02414 7.16144 7.68354 8.52805 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.011122 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.252193 B = 2517.023201 C = 3824.767767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.132 3.868 5 N -0.459 5.459 6 C -0.326 4.326 7 H 0.068 0.932 8 C 0.038 3.962 9 N -0.882 5.882 10 Si 0.911 3.089 11 H -0.283 1.283 12 H -0.266 1.266 13 H -0.254 1.254 14 C 0.342 3.658 15 N -0.555 5.555 16 C 0.154 3.846 17 C -0.091 4.091 18 C -0.241 4.241 19 C -0.065 4.065 20 C -0.078 4.078 21 F -0.148 7.148 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.280 0.720 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.168 0.832 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -1.765 -13.702 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.153 4.153 4 C 0.009 3.991 5 N -0.155 5.155 6 C -0.455 4.455 7 H 0.086 0.914 8 C -0.168 4.168 9 N -0.517 5.517 10 Si 0.734 3.266 11 H -0.209 1.209 12 H -0.191 1.191 13 H -0.178 1.178 14 C 0.104 3.896 15 N -0.277 5.277 16 C 0.013 3.987 17 C -0.148 4.148 18 C -0.265 4.265 19 C -0.091 4.091 20 C -0.106 4.106 21 F -0.127 7.127 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.186 0.814 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.004 -2.804 -13.207 14.399 hybrid contribution 1.391 0.747 0.943 1.840 sum -3.613 -2.057 -12.263 12.949 Atomic orbital electron populations 1.21704 0.94376 1.02333 1.01633 1.21452 0.97108 0.94831 1.02119 1.21768 0.94741 0.98114 1.00683 1.21590 0.94797 0.82674 1.00076 1.42553 1.58103 1.11275 1.03586 1.18752 1.32417 1.03276 0.91021 0.91392 1.25895 0.97465 0.98683 0.94738 1.70019 1.37107 1.40236 1.04354 0.86289 0.80543 0.79278 0.80526 1.20909 1.19078 1.17802 1.19150 0.93184 0.89601 0.87642 1.67162 1.24960 1.37432 0.98108 1.21707 0.92543 0.90699 0.93732 1.20730 1.01021 1.02410 0.90640 1.21617 1.07840 0.98212 0.98812 1.21590 0.97106 0.99494 0.90891 1.18345 1.11162 0.96698 0.84378 1.91425 1.85701 1.89490 1.46117 0.93520 0.92464 0.90969 0.90946 0.92464 0.94383 0.92213 0.91380 0.93058 0.90970 0.89428 0.91238 0.87991 0.81427 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.52 5.93 30.60 0.18 -3.34 16 3 C -0.11 -4.44 5.52 30.60 0.17 -4.28 16 4 C 0.13 5.86 3.67 86.38 0.32 6.17 16 5 N -0.46 -23.44 2.13 -517.69 -1.10 -24.54 16 6 C -0.33 -18.80 7.79 84.04 0.65 -18.15 16 7 H 0.07 4.38 6.59 -2.91 -0.02 4.36 16 8 C 0.04 2.15 4.96 84.87 0.42 2.57 16 9 N -0.88 -51.70 13.97 21.65 0.30 -51.40 16 10 Si 0.91 43.74 26.54 68.60 1.82 45.56 16 11 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.25 -11.93 6.21 99.48 0.62 -11.31 16 14 C 0.34 16.31 7.32 133.14 0.97 17.28 16 15 N -0.56 -22.76 9.15 -181.10 -1.66 -24.41 16 16 C 0.15 4.96 6.78 42.53 0.29 5.24 16 17 C -0.09 -1.93 10.16 71.23 0.72 -1.20 16 18 C -0.24 -7.08 9.73 22.39 0.22 -6.86 16 19 C -0.06 -2.29 10.15 22.48 0.23 -2.06 16 20 C -0.08 -3.63 7.19 22.62 0.16 -3.47 16 21 F -0.15 -7.74 13.77 44.97 0.62 -7.12 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 29 H 0.07 2.90 7.62 -2.39 -0.02 2.88 16 30 H 0.05 2.36 5.29 -2.39 -0.01 2.35 16 31 H 0.28 15.15 8.31 -92.71 -0.77 14.37 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 35 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -66.52 300.38 6.01 -60.51 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.33 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.05 Total: -10.93 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -2.46 Total: -100.36 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.62 Total: -7.12 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.82 Total: 45.56 kcal Total: -66.52 6.01 -60.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.518 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds