Wall clock time and date at job start Sun Mar 29 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 N 1.46895 * 109.47281 * 239.99777 * 2 1 3 5 5 C 1.53002 * 109.47078 * 119.99939 * 2 1 3 6 6 N 1.46505 * 109.46816 * 180.02562 * 5 2 1 7 7 C 1.39681 * 119.99582 * 180.02562 * 6 5 2 8 8 C 1.39288 * 119.94066 * 359.97438 * 7 6 5 9 9 C 1.38704 * 120.40004 * 180.02562 * 8 7 6 10 10 F 1.35101 * 119.86077 * 179.97438 * 9 8 7 11 11 C 1.37914 * 120.27357 * 0.02562 * 9 8 7 12 12 C 1.40714 * 119.87082 * 359.97438 * 11 9 8 13 13 C 1.41408 * 120.19728 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00234 * 204.48039 * 13 12 11 15 15 C 1.39924 * 119.99814 * 24.48105 * 13 12 11 16 16 N 1.30833 * 120.00225 * 17.88998 * 15 13 12 17 17 Si 1.86800 * 119.99922 * 197.89343 * 15 13 12 18 18 H 1.48502 * 109.47527 * 94.68633 * 17 15 13 19 19 H 1.48498 * 109.47305 * 214.69446 * 17 15 13 20 20 H 1.48507 * 109.46953 * 334.68920 * 17 15 13 21 21 C 1.38294 * 119.93754 * 179.97438 * 7 6 5 22 22 H 1.08997 * 109.46887 * 300.00234 * 1 2 3 23 23 H 1.08994 * 109.46847 * 59.99760 * 1 2 3 24 24 H 1.08999 * 109.46983 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47632 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46911 * 300.00425 * 3 2 1 27 27 H 1.09000 * 109.46833 * 59.99713 * 3 2 1 28 28 H 1.00901 * 111.00398 * 176.04671 * 4 2 1 29 29 H 1.00898 * 111.00220 * 300.00573 * 4 2 1 30 30 H 1.08996 * 109.46998 * 59.99928 * 5 2 1 31 31 H 1.08997 * 109.47120 * 299.99684 * 5 2 1 32 32 H 0.96998 * 120.00371 * 359.97438 * 6 5 2 33 33 H 1.08002 * 119.80151 * 0.27970 * 8 7 6 34 34 H 1.08005 * 120.06719 * 179.97438 * 11 9 8 35 35 H 0.96998 * 120.00151 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.13719 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5051 -0.7207 1.2495 7 6 4.2034 -1.3259 2.2969 8 6 3.5057 -1.9290 3.3407 9 6 4.1895 -2.5323 4.3859 10 9 3.5018 -3.1137 5.3930 11 6 5.5686 -2.5402 4.4017 12 6 6.2850 -1.9342 3.3531 13 6 7.6990 -1.9378 3.3627 14 1 8.2446 -1.1781 2.8227 15 6 8.3913 -2.9257 4.0717 16 7 7.7794 -4.0261 4.4270 17 14 10.1893 -2.6732 4.5111 18 1 10.2897 -2.1101 5.8816 19 1 10.8996 -3.9762 4.4580 20 1 10.8080 -1.7323 3.5429 21 6 5.5864 -1.3251 2.2957 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.0262 -0.6501 -1.2558 29 1 1.6961 -1.6479 -1.2227 30 1 1.6767 -1.7489 1.2493 31 1 1.6767 -0.2074 2.1392 32 1 3.9901 -0.3007 0.5220 33 1 2.4257 -1.9306 3.3342 34 1 6.0977 -3.0105 5.2174 35 1 8.2592 -4.7108 4.9188 36 1 6.1276 -0.8571 1.4867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171194498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:09 Heat of formation + Delta-G solvation = -57.923156 kcal Electronic energy + Delta-G solvation = -18251.359168 eV Core-core repulsion = 15261.939728 eV Total energy + Delta-G solvation = -2989.419440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.57528 -40.05878 -38.64478 -36.09830 -34.30111 -31.48461 -30.62610 -29.76163 -28.28450 -27.40830 -26.18524 -22.86317 -22.41301 -20.31121 -19.55114 -17.89887 -17.44510 -16.75930 -16.61671 -16.49076 -16.24194 -16.04945 -15.90437 -15.31509 -14.71580 -14.56000 -14.44345 -13.73947 -13.43274 -13.15766 -12.91081 -12.88859 -12.80599 -12.65758 -12.52732 -12.17804 -12.12339 -11.98823 -11.82264 -11.53695 -11.14976 -10.47248 -9.69769 -9.39094 -8.70487 -8.11428 -6.46535 0.82135 1.10899 1.39635 1.53697 1.54156 2.19321 2.60376 2.66654 3.54368 3.64084 3.80415 3.87326 3.97949 4.17042 4.49670 4.60852 4.68094 4.75537 4.83117 4.91526 4.94524 5.01955 5.02376 5.05861 5.24695 5.31292 5.31693 5.43466 5.67266 5.80061 5.91328 6.12053 6.20060 6.47770 6.50121 6.69628 6.86244 6.89580 7.07692 8.27754 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.029585 B = 0.005113 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.210822 B = 5475.173374 C = 6155.323377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.109 3.891 3 C -0.137 4.137 4 N -0.835 5.835 5 C 0.103 3.897 6 N -0.741 5.741 7 C 0.264 3.736 8 C -0.341 4.341 9 C 0.124 3.876 10 F -0.167 7.167 11 C -0.265 4.265 12 C 0.136 3.864 13 C -0.488 4.488 14 H 0.086 0.914 15 C 0.035 3.965 16 N -0.818 5.818 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.252 1.252 21 C -0.312 4.312 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.344 0.656 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.398 0.602 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.290 0.710 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 6.374 -7.136 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.016 3.984 3 C -0.195 4.195 4 N -0.365 5.365 5 C -0.024 4.024 6 N -0.375 5.375 7 C 0.161 3.839 8 C -0.365 4.365 9 C 0.105 3.895 10 F -0.146 7.146 11 C -0.286 4.286 12 C 0.132 3.868 13 C -0.517 4.517 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.443 5.443 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.176 1.176 21 C -0.336 4.336 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.325 6.647 -7.382 12.961 hybrid contribution 1.289 -0.984 1.164 1.996 sum -7.036 5.663 -6.218 10.966 Atomic orbital electron populations 1.21740 0.91860 1.02575 1.02968 1.21037 0.96543 0.94379 0.86438 1.21799 1.00802 0.94301 1.02621 1.59089 1.16409 1.21518 1.39474 1.22137 0.80495 0.99794 0.99968 1.44400 1.04962 1.63805 1.24290 1.17103 0.90248 0.89595 0.86961 1.19860 0.98383 1.18518 0.99706 1.17598 0.89937 0.96172 0.85811 1.91310 1.80380 1.82958 1.59982 1.21060 0.90852 1.13342 1.03357 1.17407 0.93756 0.87139 0.88466 1.19895 0.91516 1.11572 1.28684 0.89557 1.26891 1.05791 0.92979 0.92454 1.69915 1.40884 1.05441 1.28089 0.85125 0.75485 0.79075 0.79642 1.18860 1.19229 1.17571 1.20557 0.91669 1.18728 1.02680 0.91311 0.90890 0.92354 0.93209 0.91011 0.91780 0.84674 0.84288 0.93585 0.93022 0.76513 0.86609 0.87720 0.89939 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.77 71.98 0.63 -1.61 16 2 C 0.11 2.18 0.96 3.53 0.00 2.19 16 3 C -0.14 -2.66 8.56 71.98 0.62 -2.04 16 4 N -0.83 -16.34 8.86 -151.57 -1.34 -17.68 16 5 C 0.10 2.70 3.98 86.38 0.34 3.04 16 6 N -0.74 -23.49 5.22 -339.60 -1.77 -25.26 16 7 C 0.26 11.27 6.64 38.16 0.25 11.52 16 8 C -0.34 -15.59 9.30 22.63 0.21 -15.38 16 9 C 0.12 6.41 7.28 22.30 0.16 6.57 16 10 F -0.17 -8.29 17.26 44.97 0.78 -7.51 16 11 C -0.26 -14.73 8.67 22.80 0.20 -14.53 16 12 C 0.14 7.37 5.57 -21.31 -0.12 7.26 16 13 C -0.49 -25.90 9.05 23.46 0.21 -25.69 16 14 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 15 C 0.04 1.76 5.14 85.25 0.44 2.20 16 16 N -0.82 -43.34 10.96 21.82 0.24 -43.11 16 17 Si 0.99 37.55 29.59 68.60 2.03 39.58 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.31 -14.92 9.63 22.86 0.22 -14.70 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 1.03 6.86 -2.39 -0.02 1.01 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.34 6.82 7.74 -89.69 -0.69 6.13 16 29 H 0.34 6.51 9.00 -89.70 -0.81 5.71 16 30 H 0.05 1.28 7.94 -2.39 -0.02 1.26 16 31 H 0.05 1.43 7.94 -2.39 -0.02 1.41 16 32 H 0.40 11.22 6.31 -92.71 -0.58 10.63 16 33 H 0.12 4.78 6.70 -2.91 -0.02 4.76 16 34 H 0.10 6.16 6.15 -2.91 -0.02 6.14 16 35 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 36 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -59.21 300.36 2.13 -57.08 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.97 Total: 38.07 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.17 Total: -41.18 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.88 Total: -86.05 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.78 Total: -7.51 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -59.21 2.13 -57.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171194498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.840 kcal (2) G-P(sol) polarization free energy of solvation -59.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds