Wall clock time and date at job start Sun Mar 29 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48503 * 109.46891 * 239.99605 * 3 2 1 5 5 H 1.48494 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99897 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00347 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47551 * 179.97438 * 9 7 2 11 11 C 1.47957 * 111.00340 * 169.99761 * 10 9 7 12 12 C 1.53930 * 86.18036 * 222.41902 * 11 10 9 13 13 O 1.42896 * 113.73799 * 138.08276 * 12 11 10 14 14 C 1.42895 * 114.00463 * 149.99487 * 13 12 11 15 15 C 1.53003 * 109.47102 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47020 * 180.02562 * 15 14 13 17 17 N 1.28604 * 124.61494 * 90.00322 * 16 15 14 18 18 C 1.31387 * 108.71396 * 179.97438 * 17 16 15 19 19 C 1.39667 * 105.89980 * 359.97438 * 18 17 16 20 20 N 1.28598 * 124.62248 * 269.97726 * 16 15 14 21 21 C 1.47957 * 111.00045 * 70.63442 * 10 9 7 22 22 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47034 * 59.99294 * 9 7 2 24 24 H 1.09004 * 109.46708 * 299.99654 * 9 7 2 25 25 H 1.09000 * 113.75907 * 108.09753 * 11 10 9 26 26 H 1.09001 * 113.75885 * 336.73289 * 11 10 9 27 27 H 1.09007 * 113.73140 * 269.25479 * 12 11 10 28 28 H 1.09003 * 109.47045 * 60.00033 * 14 13 12 29 29 H 1.08995 * 109.47222 * 300.00063 * 14 13 12 30 30 H 1.08994 * 109.47235 * 60.00237 * 15 14 13 31 31 H 1.09000 * 109.47325 * 299.99732 * 15 14 13 32 32 H 1.07998 * 127.04695 * 179.97438 * 18 17 16 33 33 H 1.08000 * 127.05183 * 180.02562 * 19 18 17 34 34 H 1.09003 * 113.76200 * 23.26911 * 21 10 9 35 35 H 1.09000 * 113.76005 * 251.90247 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5162 -4.9028 0.2404 12 6 2.6928 -5.2412 1.1735 13 8 2.2971 -5.8746 2.3918 14 6 3.2756 -6.7678 2.9271 15 6 2.7479 -7.3845 4.2241 16 7 3.7514 -8.2997 4.7732 17 7 4.6767 -7.9592 5.5989 18 6 5.3974 -9.0198 5.8853 19 6 4.8361 -10.0716 5.1577 20 7 3.8268 -9.5531 4.4956 21 6 2.8983 -3.7212 1.3037 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 1.4576 -5.5406 -0.6415 26 1 0.5618 -4.8001 0.7568 27 1 3.5144 -5.7555 0.6747 28 1 4.1943 -6.2187 3.1337 29 1 3.4795 -7.5584 2.2051 30 1 1.8292 -7.9334 4.0179 31 1 2.5444 -6.5936 4.9460 32 1 6.2492 -9.0683 6.5475 33 1 5.1646 -11.1003 5.1423 34 1 2.3481 -3.2730 2.1311 35 1 3.9439 -3.4150 1.2713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225041246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:22 Heat of formation + Delta-G solvation = 105.916880 kcal Electronic energy + Delta-G solvation = -17678.999689 eV Core-core repulsion = 14716.604848 eV Total energy + Delta-G solvation = -2962.394841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.77426 -39.48803 -37.01955 -34.23398 -32.82222 -32.65456 -29.86019 -28.70769 -25.66113 -25.03315 -24.09030 -23.11625 -21.65556 -21.36360 -19.38705 -17.79586 -17.00775 -16.61006 -16.21775 -15.99362 -15.34367 -15.06253 -14.68205 -14.32208 -14.04625 -13.68030 -12.89233 -12.60749 -12.08772 -11.98467 -11.87759 -11.73016 -11.36004 -11.12177 -11.00841 -10.86471 -10.66861 -10.58317 -10.28917 -9.75736 -9.58888 -9.33515 -9.19249 -8.50745 -7.86065 -6.06453 -4.08685 1.55430 1.95328 2.23568 3.31901 3.35721 3.38762 3.70654 3.94734 4.40417 4.55400 4.60747 4.76069 4.79505 4.93254 4.94248 5.10965 5.20834 5.29678 5.38199 5.40906 5.73235 5.80916 5.93004 6.06675 6.12976 6.33506 6.42472 6.44790 6.64045 7.18046 7.26280 7.60149 7.84974 8.07856 8.09448 8.38597 8.97993 9.55751 11.04805 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043815 B = 0.003356 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.893254 B = 8341.315866 C = 8684.825493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.164 3.836 10 N -0.476 5.476 11 C 0.002 3.998 12 C 0.054 3.946 13 O -0.372 6.372 14 C 0.051 3.949 15 C 0.141 3.859 16 N -0.152 5.152 17 N -0.285 5.285 18 C -0.030 4.030 19 C -0.030 4.030 20 N -0.287 5.287 21 C 0.007 3.993 22 H 0.263 0.737 23 H 0.034 0.966 24 H 0.001 0.999 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.198 0.802 33 H 0.198 0.802 34 H 0.076 0.924 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.113 -18.410 9.866 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.037 3.963 10 N -0.201 5.201 11 C -0.128 4.128 12 C -0.004 4.004 13 O -0.290 6.290 14 C -0.028 4.028 15 C 0.021 3.979 16 N -0.055 5.055 17 N -0.126 5.126 18 C -0.212 4.212 19 C -0.212 4.212 20 N -0.129 5.129 21 C -0.122 4.122 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.215 0.785 33 H 0.215 0.785 34 H 0.095 0.905 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.153 -17.239 8.811 20.639 hybrid contribution 0.803 0.274 0.946 1.271 sum 7.956 -16.965 9.758 21.126 Atomic orbital electron populations 1.69945 1.06080 1.27010 1.50630 1.24993 0.94892 0.99394 0.95232 0.86533 0.79447 0.82596 0.78696 1.20123 1.21262 1.20210 1.21049 0.93396 0.89962 1.50703 0.92055 1.20201 0.90866 0.88438 0.96752 1.68545 1.21502 1.02118 1.27920 1.24188 0.96508 0.94775 0.97279 1.24529 0.98506 0.93321 0.84048 1.87899 1.41079 1.59388 1.40589 1.22618 0.92711 0.93545 0.93908 1.21739 0.87942 0.91875 0.96343 1.48014 1.22546 1.04922 1.29970 1.74140 1.01427 1.28167 1.08888 1.24851 1.02925 0.88827 1.04626 1.24836 0.95201 1.02184 0.99022 1.74103 1.21255 0.94896 1.22597 1.24203 1.01129 0.92802 0.94091 0.92767 0.94840 0.98091 0.89862 0.90940 0.89186 0.92238 0.92416 0.86443 0.86337 0.78533 0.78547 0.90548 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.63 8.84 -34.44 -0.30 -14.93 16 8 H 0.06 1.73 7.80 -52.48 -0.41 1.32 16 9 C 0.16 4.33 4.58 -4.98 -0.02 4.30 16 10 N -0.48 -10.46 6.25 -240.01 -1.50 -11.96 16 11 C 0.00 0.03 7.81 -2.77 -0.02 0.01 16 12 C 0.05 0.86 4.50 -25.80 -0.12 0.74 16 13 O -0.37 -5.44 10.36 -35.23 -0.37 -5.80 16 14 C 0.05 0.59 6.10 37.16 0.23 0.82 16 15 C 0.14 1.46 6.91 -4.04 -0.03 1.43 16 16 N -0.15 -1.77 3.95 -10.62 -0.04 -1.81 16 17 N -0.29 -3.34 12.05 30.67 0.37 -2.97 16 18 C -0.03 -0.26 12.20 -17.21 -0.21 -0.47 16 19 C -0.03 -0.26 12.19 -17.22 -0.21 -0.47 16 20 N -0.29 -3.28 12.05 30.67 0.37 -2.91 16 21 C 0.01 0.13 7.29 -2.77 -0.02 0.11 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.00 0.04 7.69 -51.93 -0.40 -0.36 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 27 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.08 1.59 7.78 -51.93 -0.40 1.18 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -32.92 305.04 -6.63 -39.54 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.97 Total: -2.40 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.80 Total: -6.92 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.07 Total: -45.78 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.37 Total: -5.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.92 -6.63 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225041246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.459 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds