Wall clock time and date at job start Sun Mar 29 2020 23:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35562 * 125.81847 * 2 1 4 4 N 1.35410 * 107.15570 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.43466 * 180.02562 * 4 3 2 6 6 C 1.36661 * 107.12280 * 0.02562 * 4 3 2 7 7 C 1.47410 * 125.86417 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00042 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00013 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99908 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47138 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46930 * 294.99710 * 11 10 9 13 13 C 1.52997 * 109.47143 * 174.99644 * 11 10 9 14 14 N 1.46506 * 109.47035 * 54.99480 * 11 10 9 15 15 C 1.36937 * 119.99708 * 204.99824 * 14 11 10 16 16 H 1.07996 * 120.00283 * 0.02562 * 15 14 11 17 17 C 1.38815 * 119.99959 * 179.97438 * 15 14 11 18 18 N 1.31611 * 120.00413 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99649 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47414 * 89.99565 * 19 17 15 21 21 H 1.48504 * 109.46784 * 209.99684 * 19 17 15 22 22 H 1.48501 * 109.47148 * 329.99276 * 19 17 15 23 23 N 1.31618 * 108.27504 * 0.22488 * 6 4 3 24 24 H 1.09005 * 109.46915 * 90.00390 * 1 2 3 25 25 H 1.09003 * 109.46516 * 209.99764 * 1 2 3 26 26 H 1.08997 * 109.47496 * 329.99702 * 1 2 3 27 27 H 1.07993 * 126.42643 * 0.04359 * 3 2 1 28 28 H 0.97006 * 120.00010 * 359.97438 * 9 7 6 29 29 H 1.09000 * 109.47411 * 60.00005 * 10 9 7 30 30 H 1.09000 * 109.46747 * 299.99993 * 10 9 7 31 31 H 1.09002 * 109.47153 * 60.00035 * 13 11 10 32 32 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 33 33 H 1.08996 * 109.46952 * 299.99863 * 13 11 10 34 34 H 0.97000 * 120.00117 * 25.00230 * 14 11 10 35 35 H 0.97000 * 120.00415 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 -0.0006 5 1 4.3788 1.2209 -0.0004 6 6 3.5466 -0.7002 -0.0015 7 6 4.7175 -1.5956 -0.0029 8 8 5.8403 -1.1284 -0.0038 9 7 4.5439 -2.9321 -0.0032 10 6 5.7076 -3.8220 -0.0040 11 6 5.2366 -5.2777 -0.0049 12 1 4.7117 -5.4903 0.9266 13 6 6.4467 -6.2053 -0.1315 14 7 4.3321 -5.4976 -1.1362 15 6 3.4025 -6.5018 -1.0844 16 1 3.3358 -7.1314 -0.2095 17 6 2.5451 -6.7099 -2.1561 18 7 1.6513 -7.6747 -2.1062 19 14 2.6600 -5.6205 -3.6692 20 1 3.6146 -6.2172 -4.6376 21 1 1.3205 -5.5072 -4.3004 22 1 3.1359 -4.2709 -3.2725 23 7 2.2861 -1.0792 -0.0064 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9711 2.1277 0.0007 28 1 3.6483 -3.3049 -0.0021 29 1 6.3088 -3.6348 0.8857 30 1 6.3079 -3.6342 -0.8943 31 1 7.1196 -6.0416 0.7102 32 1 6.1111 -7.2423 -0.1317 33 1 6.9714 -5.9927 -1.0629 34 1 4.3917 -4.9320 -1.9219 35 1 1.0525 -7.8203 -2.8552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265838130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:45 Heat of formation + Delta-G solvation = 2.052570 kcal Electronic energy + Delta-G solvation = -18339.505538 eV Core-core repulsion = 15372.606802 eV Total energy + Delta-G solvation = -2966.898736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.28686 -40.53282 -38.08257 -35.39646 -34.25709 -33.79652 -32.25375 -31.14241 -28.47786 -27.04295 -25.41390 -24.12862 -21.85104 -21.51846 -21.25237 -20.05931 -19.33851 -17.52315 -17.20128 -17.06815 -16.68837 -15.93895 -15.60851 -15.16711 -15.01072 -14.66537 -14.42747 -13.99949 -13.76058 -13.66387 -13.44110 -13.28056 -13.05217 -12.86578 -12.52383 -12.14770 -11.80004 -11.70397 -11.50910 -11.25609 -11.20632 -11.02131 -10.24275 -9.40479 -9.33871 -8.00103 -5.32958 0.27609 1.37497 1.39516 1.45553 1.52017 1.56102 2.29225 2.48516 2.54167 3.20341 3.33354 3.56268 3.86305 3.96303 4.10044 4.32064 4.37699 4.58246 4.69421 4.78488 4.84335 4.93338 4.97428 5.02498 5.11263 5.23487 5.27236 5.54965 5.65093 5.80990 6.17251 6.23380 6.32338 6.78844 7.00810 7.09199 7.84150 8.01889 9.21315 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.007005 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.755825 B = 3996.358386 C = 5108.533992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.035 4.035 3 C 0.009 3.991 4 N -0.513 5.513 5 H 0.441 0.559 6 C 0.110 3.890 7 C 0.602 3.398 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.119 3.881 11 C 0.161 3.839 12 H 0.059 0.941 13 C -0.154 4.154 14 N -0.749 5.749 15 C -0.220 4.220 16 H 0.064 0.936 17 C -0.056 4.056 18 N -0.981 5.981 19 Si 0.947 3.053 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.261 1.261 23 N -0.469 5.469 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.238 0.762 28 H 0.415 0.585 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.363 0.637 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 20.528 5.270 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.169 4.169 3 C -0.131 4.131 4 N -0.116 5.116 5 H 0.282 0.718 6 C -0.149 4.149 7 C 0.387 3.613 8 O -0.453 6.453 9 N -0.345 5.345 10 C -0.004 4.004 11 C 0.053 3.947 12 H 0.077 0.923 13 C -0.214 4.214 14 N -0.393 5.393 15 C -0.351 4.351 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.632 5.632 19 Si 0.776 3.224 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.187 1.187 23 N -0.193 5.193 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.255 0.745 28 H 0.252 0.748 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.150 19.785 5.365 20.915 hybrid contribution -0.068 0.818 -1.154 1.416 sum 4.081 20.603 4.211 21.421 Atomic orbital electron populations 1.20155 0.85450 1.03817 1.02994 1.21594 0.98500 0.88104 1.08726 1.23503 0.81656 1.02386 1.05545 1.42923 1.10294 1.06367 1.52001 0.71771 1.22361 0.93255 0.83619 1.15698 1.16650 0.85729 0.82284 0.76643 1.90772 1.24429 1.76538 1.53598 1.45794 1.12201 1.04679 1.71782 1.21829 0.87115 0.88255 1.03222 1.20696 0.91264 0.91773 0.90945 0.92332 1.22194 0.97636 0.99495 1.02075 1.42821 1.40312 1.38143 1.18027 1.18996 1.08173 1.06723 1.01245 0.91790 1.25323 0.98410 0.99914 1.01154 1.69850 1.24805 1.35476 1.33022 0.85536 0.76459 0.79726 0.80728 1.20840 1.22606 1.18656 1.70135 1.00102 1.33132 1.15963 0.90940 0.92469 0.87739 0.74545 0.74794 0.88708 0.91225 0.90244 0.93926 0.92762 0.80446 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.42 71.24 0.74 -0.47 16 2 C -0.04 -0.85 7.07 41.75 0.30 -0.55 16 3 C 0.01 0.15 11.91 83.52 0.99 1.15 16 4 N -0.51 -10.67 6.14 -188.02 -1.16 -11.82 16 5 H 0.44 6.76 8.96 -92.71 -0.83 5.93 16 6 C 0.11 3.35 7.95 136.28 1.08 4.43 16 7 C 0.60 20.17 7.81 86.66 0.68 20.85 16 8 O -0.57 -20.25 17.09 -4.06 -0.07 -20.32 16 9 N -0.69 -23.71 5.38 -466.38 -2.51 -26.22 16 10 C 0.12 3.71 5.23 86.38 0.45 4.16 16 11 C 0.16 5.73 3.05 44.99 0.14 5.86 16 12 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 13 C -0.15 -4.81 9.49 71.98 0.68 -4.13 16 14 N -0.75 -33.74 4.37 -322.92 -1.41 -35.15 16 15 C -0.22 -12.22 10.41 84.03 0.87 -11.35 16 16 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 17 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 18 N -0.98 -62.76 13.97 21.65 0.30 -62.45 16 19 Si 0.95 46.76 27.74 68.60 1.90 48.66 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 22 H -0.26 -12.10 6.52 99.48 0.65 -11.45 16 23 N -0.47 -15.29 10.90 -177.63 -1.94 -17.23 16 24 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.24 1.22 8.06 -2.91 -0.02 1.19 16 28 H 0.42 15.61 7.82 -92.70 -0.73 14.89 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.36 16.34 5.66 -92.71 -0.52 15.82 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -74.68 305.26 0.52 -74.16 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -1.01 Total: 33.26 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.41 Total: 17.12 kcal Atomic # 7 Polarization: -146.16 SS G_CDS: -6.71 Total: -152.87 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.32 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -74.68 0.52 -74.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265838130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.208 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds