Wall clock time and date at job start Sun Mar 29 2020 23:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 F 1.39901 * 109.47222 * 239.99748 * 2 1 3 5 5 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 6 6 C 1.52999 * 109.46626 * 184.99727 * 5 2 1 7 7 N 1.46506 * 109.46691 * 179.97438 * 6 5 2 8 8 C 1.38826 * 119.99780 * 179.97438 * 7 6 5 9 9 C 1.39798 * 119.58383 * 0.02562 * 8 7 6 10 10 C 1.38600 * 119.48984 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.67936 * 359.97438 * 10 9 8 12 12 C 1.40558 * 119.14753 * 0.02562 * 11 10 9 13 13 C 1.41314 * 119.78004 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00310 * 0.02562 * 13 12 11 15 15 C 1.40026 * 120.00112 * 179.97438 * 13 12 11 16 16 N 1.30751 * 119.99789 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00407 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46791 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46895 * 119.99909 * 17 15 13 20 20 H 1.48495 * 109.47066 * 240.00411 * 17 15 13 21 21 N 1.31959 * 119.58387 * 179.73063 * 8 7 6 22 22 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 23 23 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 24 24 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.08993 * 109.46955 * 305.00200 * 5 2 1 29 29 H 1.09000 * 109.47050 * 65.00029 * 5 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 6 5 2 31 31 H 1.09000 * 109.47160 * 60.00369 * 6 5 2 32 32 H 0.96999 * 120.00076 * 0.02562 * 7 6 5 33 33 H 1.07998 * 120.25532 * 359.96726 * 9 8 7 34 34 H 1.07992 * 120.66234 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.42099 * 179.97438 * 11 10 9 36 36 H 0.96994 * 119.99619 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7213 1.2493 6 6 3.5648 -0.6133 1.3137 7 7 4.0530 -1.3034 2.5103 8 6 5.4136 -1.3406 2.7834 9 6 6.3100 -0.7163 1.9111 10 6 7.6680 -0.7543 2.1860 11 6 8.0970 -1.4137 3.3246 12 6 7.1464 -2.0221 4.1625 13 6 7.5697 -2.6994 5.3282 14 1 8.6205 -2.7481 5.5731 15 6 6.6267 -3.3067 6.1665 16 7 5.3546 -3.2473 5.8704 17 14 7.1861 -4.2015 7.7079 18 1 8.6651 -4.1242 7.8158 19 1 6.5694 -3.5664 8.9002 20 1 6.7685 -5.6245 7.6332 21 7 5.8440 -1.9599 3.8663 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7515 -1.7715 1.2057 30 1 3.9994 -1.0728 0.4261 31 1 3.8531 0.4369 1.3574 32 1 3.4257 -1.7349 3.1112 33 1 5.9472 -0.2085 1.0297 34 1 8.3771 -0.2780 1.5253 35 1 9.1487 -1.4609 3.5657 36 1 4.7014 -3.6683 6.4509 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327725066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:11 Heat of formation + Delta-G solvation = -44.670299 kcal Electronic energy + Delta-G solvation = -18127.614445 eV Core-core repulsion = 15138.769692 eV Total energy + Delta-G solvation = -2988.844753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.64199 -40.15010 -37.70805 -35.77032 -34.83787 -32.35442 -31.41297 -29.13921 -28.41326 -27.24610 -24.53454 -23.31475 -22.11969 -21.05537 -19.27782 -18.11328 -16.92788 -16.89476 -16.60578 -16.29965 -16.02137 -15.76456 -15.68718 -14.85197 -14.65754 -14.23093 -13.91054 -13.70248 -13.23498 -13.18203 -12.93425 -12.87957 -12.80361 -12.69652 -12.56239 -12.43533 -12.20818 -11.75031 -11.56990 -11.51646 -11.27225 -10.65960 -9.84605 -9.46285 -8.31663 -8.23507 -6.48675 1.04636 1.33069 1.42118 1.57415 1.57561 2.25568 2.57450 2.92061 3.57728 3.66201 3.70549 3.83902 4.03130 4.21870 4.26199 4.36693 4.52854 4.67852 4.73704 4.80047 4.82473 4.92249 4.95629 4.99627 5.00842 5.13719 5.17546 5.28337 5.31803 5.37262 5.70800 5.95339 6.05687 6.22728 6.53999 6.83094 6.93852 7.21066 8.33151 8.51066 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.004704 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.685473 B = 5950.509050 C = 6652.365288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 C -0.177 4.177 4 F -0.228 7.228 5 C -0.143 4.143 6 C 0.139 3.861 7 N -0.734 5.734 8 C 0.392 3.608 9 C -0.370 4.370 10 C -0.030 4.030 11 C -0.343 4.343 12 C 0.258 3.742 13 C -0.471 4.471 14 H 0.087 0.913 15 C 0.026 3.974 16 N -0.753 5.753 17 Si 0.987 3.013 18 H -0.255 1.255 19 H -0.266 1.266 20 H -0.267 1.267 21 N -0.564 5.564 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.394 0.606 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 6.041 -6.929 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.096 3.904 3 C -0.235 4.235 4 F -0.209 7.209 5 C -0.181 4.181 6 C 0.015 3.985 7 N -0.369 5.369 8 C 0.152 3.848 9 C -0.396 4.396 10 C -0.054 4.054 11 C -0.366 4.366 12 C 0.131 3.869 13 C -0.503 4.503 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.375 5.375 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.191 1.191 20 H -0.192 1.192 21 N -0.287 5.287 22 H 0.112 0.888 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.228 0.772 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.878 5.699 -6.538 13.913 hybrid contribution 0.807 -0.298 0.089 0.865 sum -10.072 5.401 -6.449 13.123 Atomic orbital electron populations 1.22353 0.91400 1.03914 1.04816 1.21058 0.96077 0.92468 0.80840 1.22482 1.02365 0.93864 1.04759 1.92828 1.90733 1.83382 1.53941 1.22320 0.94102 1.02494 0.99177 1.21278 0.94185 0.96478 0.86556 1.44287 1.02977 1.61997 1.27688 1.18991 0.85905 0.89778 0.90154 1.20950 0.93905 1.18876 1.05842 1.21008 0.95058 0.94429 0.94899 1.21703 0.99005 1.14172 1.01702 1.18705 0.86785 0.89076 0.92374 1.19979 0.95245 1.29831 1.05237 0.89501 1.26975 0.94433 0.95975 1.02198 1.70256 1.02577 1.30249 1.34426 0.85091 0.79819 0.77892 0.76433 1.17878 1.19053 1.19168 1.68197 1.16946 1.25498 1.18084 0.88846 0.90442 0.91520 0.92030 0.90322 0.89004 0.87957 0.90603 0.93973 0.91875 0.77155 0.86777 0.85285 0.87833 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.93 71.98 0.64 -1.78 16 2 C 0.11 2.29 1.38 -10.79 -0.01 2.28 16 3 C -0.18 -3.07 8.44 71.98 0.61 -2.46 16 4 F -0.23 -6.01 16.49 44.97 0.74 -5.26 16 5 C -0.14 -3.32 4.69 30.60 0.14 -3.18 16 6 C 0.14 4.37 4.31 86.38 0.37 4.74 16 7 N -0.73 -30.11 5.72 -344.98 -1.97 -32.08 16 8 C 0.39 19.91 7.65 133.42 1.02 20.93 16 9 C -0.37 -17.42 9.34 22.73 0.21 -17.21 16 10 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 11 C -0.34 -18.01 9.83 22.87 0.22 -17.78 16 12 C 0.26 15.07 6.55 40.18 0.26 15.33 16 13 C -0.47 -26.63 9.14 23.46 0.21 -26.42 16 14 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 15 C 0.03 1.35 5.50 85.29 0.47 1.82 16 16 N -0.75 -41.27 11.46 21.84 0.25 -41.02 16 17 Si 0.99 39.00 29.56 68.60 2.03 41.03 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 N -0.56 -32.67 7.89 -186.58 -1.47 -34.14 16 22 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 1.24 6.35 -2.39 -0.02 1.22 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.44 7.71 -2.39 -0.02 1.42 16 31 H 0.06 1.90 6.12 -2.39 -0.01 1.89 16 32 H 0.39 16.04 8.59 -92.71 -0.80 15.24 16 33 H 0.11 4.70 6.68 -2.91 -0.02 4.68 16 34 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 35 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 36 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 Total: -1.00 -67.35 303.03 4.24 -63.12 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.28 Total: 33.26 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.38 Total: -24.90 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.20 Total: -107.25 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.74 Total: -5.26 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -67.35 4.24 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327725066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.446 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds