Wall clock time and date at job start Sun Mar 29 2020 23:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00016 * 2 1 4 4 H 1.08997 * 110.81656 * 26.66363 * 3 2 1 5 5 C 1.54887 * 110.75581 * 263.32396 * 3 2 1 6 6 C 1.54269 * 104.19383 * 203.74267 * 5 3 2 7 7 C 1.53876 * 106.59774 * 23.61262 * 6 5 3 8 8 C 1.54261 * 106.60057 * 359.97438 * 7 6 5 9 9 H 1.09000 * 110.49050 * 95.20401 * 8 7 6 10 10 C 1.50700 * 110.48540 * 217.71397 * 8 7 6 11 11 O 1.21292 * 120.00221 * 92.47930 * 10 8 7 12 12 N 1.34778 * 119.99751 * 272.47642 * 10 8 7 13 13 C 1.37098 * 119.99532 * 176.21591 * 12 10 8 14 14 H 1.07994 * 120.00627 * 12.06931 * 13 12 10 15 15 C 1.38959 * 119.99841 * 192.06466 * 13 12 10 16 16 N 1.31413 * 119.99405 * 22.96027 * 15 13 12 17 17 Si 1.86796 * 120.00310 * 202.95469 * 15 13 12 18 18 H 1.48491 * 109.47403 * 265.03477 * 17 15 13 19 19 H 1.48501 * 109.46834 * 25.03466 * 17 15 13 20 20 H 1.48497 * 109.47141 * 145.02974 * 17 15 13 21 21 C 1.46494 * 120.00319 * 356.21293 * 12 10 8 22 22 C 1.47204 * 109.46782 * 83.91381 * 21 12 10 23 23 N 6.29913 * 154.02210 * 39.77878 * 2 1 3 24 24 H 1.09001 * 109.46863 * 60.00351 * 1 2 3 25 25 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47268 * 300.00674 * 1 2 3 27 27 H 1.08999 * 110.48588 * 85.06587 * 5 3 2 28 28 H 1.09002 * 110.59889 * 322.47653 * 5 3 2 29 29 H 1.08993 * 110.03671 * 264.32400 * 6 5 3 30 30 H 1.09001 * 110.02869 * 142.89539 * 6 5 3 31 31 H 1.08996 * 110.03121 * 240.70936 * 7 6 5 32 32 H 1.09006 * 110.03130 * 119.28544 * 7 6 5 33 33 H 0.97003 * 119.99442 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.47350 * 203.91577 * 21 12 10 35 35 H 1.08999 * 109.47232 * 323.91563 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3360 2.0296 0.4572 5 6 2.3873 1.7384 -1.4385 6 6 3.4950 2.7933 -1.2380 7 6 4.1257 2.5124 0.1372 8 6 3.3790 1.2971 0.7246 9 1 3.9205 0.3760 0.5093 10 6 3.1907 1.4616 2.2107 11 8 2.1766 1.9692 2.6410 12 7 4.1491 1.0446 3.0616 13 6 4.0131 1.2641 4.4080 14 1 3.0647 1.5900 4.8090 15 6 5.0954 1.0672 5.2569 16 7 6.3200 1.1179 4.7827 17 14 4.8099 0.7307 7.0720 18 1 4.8983 2.0036 7.8314 19 1 3.4623 0.1354 7.2589 20 1 5.8418 -0.2148 7.5685 21 6 5.3361 0.3568 2.5478 22 6 6.3270 1.3518 2.1061 23 7 7.0917 2.1205 1.7654 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.5271 2.1795 -1.9420 28 1 2.7673 0.8897 -2.0073 29 1 3.0644 3.7945 -1.2538 30 1 4.2477 2.6977 -2.0206 31 1 4.0012 3.3773 0.7887 32 1 5.1846 2.2805 0.0220 33 1 7.0756 0.9801 5.3752 34 1 5.7676 -0.2608 3.3355 35 1 5.0541 -0.2741 1.7049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335757234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:24 Heat of formation + Delta-G solvation = -46.558396 kcal Electronic energy + Delta-G solvation = -19334.702366 eV Core-core repulsion = 16333.402949 eV Total energy + Delta-G solvation = -3001.299417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62675 -37.74420 -35.77073 -35.53532 -34.29274 -31.85154 -29.03566 -28.03184 -27.39050 -25.83798 -24.71621 -21.29243 -20.30727 -18.81724 -17.88975 -17.10676 -16.26040 -15.97184 -15.38924 -14.68175 -14.61370 -14.28871 -13.87048 -13.60388 -13.11412 -12.95164 -12.66071 -12.30296 -11.94570 -11.85599 -11.65354 -11.33693 -11.16829 -11.12532 -11.03407 -10.86369 -10.63447 -10.44122 -10.34357 -10.28230 -9.98443 -9.28657 -9.17958 -8.51407 -8.05062 -6.50518 -3.94832 3.10067 3.22800 3.28831 3.56697 3.74600 3.97084 4.02557 4.12819 4.68828 4.79141 4.90713 5.03527 5.18917 5.27468 5.48176 5.58390 5.63668 5.68857 5.74256 5.77051 5.83910 5.87515 5.97642 6.06091 6.15209 6.28207 6.36129 6.42839 6.55052 6.64098 7.47863 7.52217 7.90471 8.30327 8.71012 9.01607 9.22492 9.76647 10.55075 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.007797 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.184261 B = 3590.485937 C = 4368.840872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.101 3.899 4 H 0.085 0.915 5 C -0.143 4.143 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.108 4.108 9 H 0.094 0.906 10 C 0.467 3.533 11 O -0.577 6.577 12 N -0.441 5.441 13 C -0.312 4.312 14 H 0.110 0.890 15 C 0.030 3.970 16 N -0.878 5.878 17 Si 0.925 3.075 18 H -0.280 1.280 19 H -0.268 1.268 20 H -0.281 1.281 21 C 0.214 3.786 22 C 0.248 3.752 23 N -0.474 5.474 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.273 0.727 34 H 0.137 0.863 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -3.615 -9.171 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.042 3.958 4 H 0.103 0.897 5 C -0.181 4.181 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.130 4.130 9 H 0.112 0.888 10 C 0.255 3.745 11 O -0.460 6.460 12 N -0.160 5.160 13 C -0.439 4.439 14 H 0.127 0.873 15 C -0.173 4.173 16 N -0.517 5.517 17 Si 0.751 3.249 18 H -0.206 1.206 19 H -0.192 1.192 20 H -0.206 1.206 21 C 0.086 3.914 22 C -0.071 4.071 23 N -0.154 5.154 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.442 -2.420 -9.343 10.624 hybrid contribution -0.238 -0.171 1.156 1.193 sum -4.680 -2.591 -8.186 9.779 Atomic orbital electron populations 1.22718 0.81518 1.02128 0.99877 1.87838 1.19391 1.27779 1.94816 1.23002 0.94166 0.84915 0.93683 0.89660 1.22803 0.98601 0.99157 0.97553 1.22012 0.97627 0.98813 0.97114 1.21994 0.99435 0.97364 0.95936 1.22126 0.96645 1.00229 0.94018 0.88758 1.19836 0.85408 0.82271 0.86947 1.90504 1.29258 1.47813 1.78435 1.43643 1.15558 1.50069 1.06759 1.19748 0.98751 1.45307 0.80049 0.87265 1.25229 0.94246 0.97027 1.00753 1.69943 0.98073 1.46645 1.37069 0.85940 0.78472 0.78491 0.82011 1.20561 1.19208 1.20645 1.18976 0.82784 0.89966 0.99647 1.29444 0.93501 0.94314 0.89795 1.80926 1.11244 1.09625 1.13617 0.94690 0.90142 0.93608 0.91771 0.90745 0.91724 0.91584 0.91202 0.91007 0.91682 0.84589 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.31 10.49 -35.23 -0.37 -6.68 16 3 C 0.10 1.68 2.64 -24.75 -0.07 1.61 16 4 H 0.09 1.55 6.94 -51.93 -0.36 1.19 16 5 C -0.14 -1.91 6.55 -25.07 -0.16 -2.07 16 6 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16 7 C -0.11 -1.87 5.71 -25.62 -0.15 -2.02 16 8 C -0.11 -1.99 2.19 -90.13 -0.20 -2.19 16 9 H 0.09 1.60 6.18 -51.93 -0.32 1.28 16 10 C 0.47 10.79 6.61 -10.98 -0.07 10.72 16 11 O -0.58 -15.13 15.39 5.55 0.09 -15.05 16 12 N -0.44 -10.49 2.60 -117.94 -0.31 -10.80 16 13 C -0.31 -8.12 9.41 -14.93 -0.14 -8.26 16 14 H 0.11 3.02 7.31 -52.49 -0.38 2.63 16 15 C 0.03 0.75 4.90 -17.46 -0.09 0.67 16 16 N -0.88 -22.00 9.44 55.50 0.52 -21.47 16 17 Si 0.92 19.70 29.61 -169.99 -5.03 14.66 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 C 0.21 4.37 4.89 -6.83 -0.03 4.34 16 22 C 0.25 5.43 11.94 -20.74 -0.25 5.18 16 23 N -0.47 -10.98 18.23 42.18 0.77 -10.21 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 33 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.14 2.87 6.06 -51.93 -0.31 2.55 16 35 H 0.08 1.38 6.22 -51.93 -0.32 1.06 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -30.04 292.02 -4.71 -34.75 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.55 Total: 2.66 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.23 Total: 7.74 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.99 Total: -42.48 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.28 Total: -21.73 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.04 -4.71 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335757234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.812 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds