Wall clock time and date at job start Sun Mar 29 2020 23:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33318 * 126.10913 * 2 1 4 4 C 1.30852 * 109.69231 * 180.02562 * 3 2 1 5 5 N 1.34504 * 109.16013 * 359.97438 * 4 3 2 6 6 H 0.97001 * 126.47075 * 179.97438 * 5 4 3 7 7 C 1.36670 * 126.10997 * 180.31159 * 2 1 3 8 8 C 1.46761 * 126.84087 * 0.03654 * 7 2 1 9 9 O 1.21688 * 120.00286 * 0.16108 * 8 7 2 10 10 N 1.34778 * 120.00050 * 180.15869 * 8 7 2 11 11 C 1.46501 * 120.00372 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46906 * 64.99882 * 12 11 10 14 14 C 1.52994 * 109.47301 * 184.99925 * 12 11 10 15 15 N 1.46502 * 109.47368 * 305.00434 * 12 11 10 16 16 C 1.36930 * 120.00449 * 155.00269 * 15 12 11 17 17 H 1.08005 * 119.99789 * 359.97438 * 16 15 12 18 18 C 1.38814 * 120.00075 * 179.97438 * 16 15 12 19 19 N 1.31621 * 119.99789 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99885 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47213 * 90.00290 * 20 18 16 22 22 H 1.48498 * 109.47255 * 210.00041 * 20 18 16 23 23 H 1.48494 * 109.47208 * 330.00225 * 20 18 16 24 24 H 1.08996 * 109.47004 * 90.02730 * 1 2 3 25 25 H 1.09004 * 109.46849 * 210.02716 * 1 2 3 26 26 H 1.08999 * 109.46522 * 330.02545 * 1 2 3 27 27 H 1.07999 * 125.42354 * 179.97438 * 4 3 2 28 28 H 0.97000 * 119.99695 * 0.02562 * 10 8 7 29 29 H 1.09000 * 109.46807 * 300.00224 * 11 10 8 30 30 H 1.08995 * 109.46761 * 60.00073 * 11 10 8 31 31 H 1.08999 * 109.47289 * 59.99855 * 14 12 11 32 32 H 1.08999 * 109.47519 * 180.02562 * 14 12 11 33 33 H 1.09000 * 109.47173 * 300.00100 * 14 12 11 34 34 H 0.97003 * 119.99266 * 334.99634 * 15 12 11 35 35 H 0.97002 * 119.99346 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7073 -0.0006 5 7 3.6122 -0.6362 -0.0004 6 1 4.4190 -1.1748 -0.0010 7 6 2.3125 -1.1041 -0.0060 8 6 1.8822 -2.5072 -0.0144 9 8 0.6963 -2.7800 -0.0195 10 7 2.8005 -3.4937 -0.0164 11 6 2.3710 -4.8943 -0.0242 12 6 3.6006 -5.8048 -0.0244 13 1 4.1480 -5.6762 0.9095 14 6 3.1558 -7.2625 -0.1582 15 7 4.4683 -5.4535 -1.1513 16 6 5.8082 -5.7303 -1.0961 17 1 6.2255 -6.2072 -0.2215 18 6 6.6302 -5.3979 -2.1641 19 7 7.9182 -5.6635 -2.1108 20 14 5.9083 -4.5737 -3.6771 21 1 5.9524 -3.0992 -3.5060 22 1 6.6989 -4.9569 -4.8742 23 1 4.4998 -5.0097 -3.8536 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3632 0.8902 0.5134 27 1 4.3971 1.3745 -0.0011 28 1 3.7458 -3.2763 -0.0120 29 1 1.7707 -5.0952 0.8631 30 1 1.7758 -5.0868 -0.9168 31 1 2.6084 -7.3912 -1.0919 32 1 4.0318 -7.9112 -0.1578 33 1 2.5103 -7.5239 0.6804 34 1 4.0935 -5.0249 -1.9367 35 1 8.4926 -5.4308 -2.8570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690654911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:48 Heat of formation + Delta-G solvation = 25.071444 kcal Electronic energy + Delta-G solvation = -18490.601988 eV Core-core repulsion = 15524.701425 eV Total energy + Delta-G solvation = -2965.900563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24802 -39.21848 -36.60775 -34.06468 -33.08326 -32.02025 -31.10963 -29.50887 -27.53785 -25.79235 -23.55297 -22.81220 -21.08233 -20.43558 -19.67239 -18.77319 -17.77048 -16.07148 -15.88463 -15.80155 -15.24493 -14.50373 -14.34233 -14.17130 -13.72508 -13.02910 -12.96635 -12.78386 -12.68658 -12.37128 -12.18264 -12.12778 -11.72768 -11.07624 -10.93662 -10.52573 -10.47831 -10.21091 -10.07589 -9.81146 -9.75761 -9.14913 -9.01313 -8.48977 -7.48906 -5.94451 -3.31980 1.28320 2.79349 2.85301 3.20126 3.27878 3.28671 3.33968 3.36501 4.38565 4.41767 4.81404 5.01295 5.09081 5.16384 5.25373 5.35693 5.64971 5.67888 5.79278 5.87133 5.92007 5.97782 6.03990 6.10736 6.29448 6.51039 6.55004 6.59418 6.84736 7.12137 7.56488 7.80811 7.85623 8.23178 8.24677 9.01484 9.73711 9.92954 11.23271 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.006624 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.698377 B = 4225.943994 C = 5109.410155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.091 3.909 3 N -0.503 5.503 4 C 0.218 3.782 5 N -0.552 5.552 6 H 0.427 0.573 7 C -0.090 4.090 8 C 0.590 3.410 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.113 3.887 12 C 0.164 3.836 13 H 0.063 0.937 14 C -0.163 4.163 15 N -0.749 5.749 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.215 0.785 28 H 0.403 0.597 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.362 0.638 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 8.533 5.222 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.044 4.044 3 N -0.223 5.223 4 C -0.066 4.066 5 N -0.157 5.157 6 H 0.267 0.733 7 C -0.206 4.206 8 C 0.377 3.623 9 O -0.410 6.410 10 N -0.367 5.367 11 C -0.011 4.011 12 C 0.054 3.946 13 H 0.081 0.919 14 C -0.223 4.223 15 N -0.393 5.393 16 C -0.379 4.379 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.711 3.289 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.232 0.768 28 H 0.239 0.761 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.195 0.805 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.601 9.011 5.295 14.887 hybrid contribution 1.122 -0.433 -1.318 1.784 sum -9.479 8.578 3.977 13.388 Atomic orbital electron populations 1.20262 0.86594 1.03455 1.02938 1.21053 0.96860 0.86668 0.99810 1.70119 1.00483 1.30489 1.21230 1.25131 0.97361 0.82179 1.01945 1.43429 1.08325 1.08915 1.55002 0.73333 1.21014 0.84373 0.95270 1.19925 1.16852 0.85944 0.82661 0.76881 1.90789 1.16056 1.83038 1.51165 1.45925 1.09894 1.06569 1.74335 1.21800 0.97811 0.79411 1.02111 1.20501 0.89348 0.92019 0.92690 0.91936 1.22323 1.01194 0.98492 1.00315 1.42874 1.05924 1.73595 1.16913 1.19061 0.81728 1.34031 1.03087 0.89022 1.24666 0.95280 1.01020 0.97755 1.69694 1.03208 1.52435 1.32280 0.86631 0.78485 0.79454 0.84356 1.21270 1.21564 1.20322 0.90899 0.89320 0.91260 0.76838 0.76112 0.91007 0.91497 0.93230 0.91789 0.93735 0.80538 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 9.87 36.01 0.36 -0.60 16 2 C 0.09 1.32 7.15 -82.51 -0.59 0.73 16 3 N -0.50 -7.02 11.20 -10.64 -0.12 -7.14 16 4 C 0.22 2.38 13.01 -90.57 -1.18 1.21 16 5 N -0.55 -6.38 6.07 -10.79 -0.07 -6.44 16 6 H 0.43 4.11 8.32 -40.82 -0.34 3.77 16 7 C -0.09 -1.30 7.08 -82.14 -0.58 -1.88 16 8 C 0.59 9.34 7.79 -12.82 -0.10 9.24 16 9 O -0.53 -9.50 14.83 5.20 0.08 -9.43 16 10 N -0.72 -10.75 5.38 -61.59 -0.33 -11.08 16 11 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 12 C 0.16 2.78 3.05 -67.93 -0.21 2.57 16 13 H 0.06 1.07 8.08 -51.92 -0.42 0.65 16 14 C -0.16 -2.58 9.49 37.15 0.35 -2.22 16 15 N -0.75 -15.73 4.37 -53.43 -0.23 -15.96 16 16 C -0.25 -6.36 10.41 -15.06 -0.16 -6.52 16 17 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 20 Si 0.88 20.84 27.73 -169.99 -4.71 16.13 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.19 6.50 -51.93 -0.34 0.85 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.22 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.40 5.88 7.38 -40.82 -0.30 5.58 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.36 7.74 5.66 -40.82 -0.23 7.51 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 300.22 15.07 4.52 4.52 Total: -1.00 -31.96 300.22 -6.91 -38.87 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -4.60 Total: 12.82 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.22 Total: 4.37 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: 0.03 Total: -67.29 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.96 -6.91 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690654911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.940 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds