Wall clock time and date at job start Sun Mar 29 2020 23:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 119.99894 * 2 1 4 4 C 1.50700 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.53007 * 109.46846 * 359.97438 * 4 2 1 6 6 C 1.53002 * 109.46826 * 240.00012 * 4 2 1 7 7 C 1.50695 * 109.47183 * 119.99549 * 4 2 1 8 8 O 1.20824 * 120.00248 * 1.28506 * 7 4 2 9 9 O 1.34228 * 119.99942 * 181.28132 * 7 4 2 10 10 C 1.45198 * 117.00208 * 185.04286 * 9 7 4 11 11 C 1.52999 * 109.47370 * 184.22171 * 10 9 7 12 12 C 1.50702 * 115.54647 * 295.04037 * 11 10 9 13 13 H 1.07996 * 119.99809 * 114.67674 * 12 11 10 14 14 C 1.37875 * 119.99618 * 294.38801 * 12 11 10 15 15 N 1.31515 * 119.99713 * 172.93926 * 14 12 11 16 16 Si 1.86797 * 120.00412 * 352.94466 * 14 12 11 17 17 H 1.48498 * 109.47308 * 94.01396 * 16 14 12 18 18 H 1.48500 * 109.47033 * 214.01197 * 16 14 12 19 19 H 1.48496 * 109.46933 * 334.00962 * 16 14 12 20 20 C 1.53002 * 117.49859 * 80.70843 * 11 10 9 21 21 C 1.52999 * 117.49902 * 149.36840 * 11 10 9 22 22 H 1.08002 * 119.99964 * 180.02562 * 1 2 3 23 23 H 1.08004 * 120.00359 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47282 * 270.00185 * 3 2 1 25 25 H 1.09003 * 109.47131 * 30.00298 * 3 2 1 26 26 H 1.09000 * 109.47033 * 149.99984 * 3 2 1 27 27 H 1.08999 * 109.46655 * 181.53458 * 5 4 2 28 28 H 1.08997 * 109.47412 * 301.53504 * 5 4 2 29 29 H 1.08997 * 109.46883 * 61.53668 * 5 4 2 30 30 H 1.08998 * 109.46726 * 302.35642 * 6 4 2 31 31 H 1.08997 * 109.47412 * 62.36074 * 6 4 2 32 32 H 1.08997 * 109.46775 * 182.35718 * 6 4 2 33 33 H 1.08999 * 109.47078 * 64.21786 * 10 9 7 34 34 H 1.09007 * 109.47037 * 304.21911 * 10 9 7 35 35 H 0.97003 * 120.00127 * 180.02562 * 15 14 12 36 36 H 1.09002 * 117.49340 * 215.00373 * 20 11 10 37 37 H 1.08998 * 117.50178 * 0.02562 * 20 11 10 38 38 H 1.09002 * 117.50019 * 359.97438 * 21 11 10 39 39 H 1.09006 * 117.49981 * 144.97618 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 1.0692 -2.4680 -0.0005 6 6 2.9431 -1.3866 1.2487 7 6 2.9298 -1.3844 -1.2311 8 8 2.9526 -0.4646 -2.0143 9 8 3.6763 -2.4768 -1.4571 10 6 4.5707 -2.4392 -2.6003 11 6 5.2543 -3.7989 -2.7580 12 6 6.1774 -4.1963 -1.6350 13 1 5.9378 -5.0472 -1.0146 14 6 7.3307 -3.4772 -1.4034 15 7 8.0643 -3.7347 -0.3427 16 14 7.8513 -2.1371 -2.5961 17 1 7.3367 -0.8267 -2.1237 18 1 9.3336 -2.0892 -2.6704 19 1 7.2974 -2.4303 -3.9424 20 6 4.4637 -4.9111 -3.4499 21 6 5.6333 -4.2391 -4.1734 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5401 0.9353 0.0004 24 1 2.2451 1.6198 -1.0276 25 1 1.4744 2.0647 0.5139 26 1 3.0159 1.1747 0.5138 27 1 1.6140 -3.4117 0.0266 28 1 0.4249 -2.3952 0.8757 29 1 0.4605 -2.4257 -0.9036 30 1 3.6231 -0.5350 1.2703 31 1 2.3133 -1.3715 2.1381 32 1 3.5196 -2.3114 1.2274 33 1 5.3258 -1.6686 -2.4456 34 1 3.9998 -2.2130 -3.5009 35 1 8.8756 -3.2285 -0.1795 36 1 4.6112 -5.9304 -3.0927 37 1 3.4566 -4.6742 -3.7931 38 1 5.3952 -3.5603 -4.9923 39 1 6.5505 -4.8160 -4.2925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820139355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:21 Heat of formation + Delta-G solvation = -49.663700 kcal Electronic energy + Delta-G solvation = -19464.558632 eV Core-core repulsion = 16566.664902 eV Total energy + Delta-G solvation = -2897.893729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34837 -37.70960 -36.56789 -35.32488 -32.15582 -31.97425 -28.47401 -27.39907 -25.94375 -25.34144 -23.75355 -21.68046 -20.86172 -19.19031 -17.83568 -17.01062 -16.39232 -15.89050 -15.82841 -15.01772 -14.76882 -14.03720 -13.95179 -13.20609 -13.06803 -12.81287 -12.70757 -12.36006 -12.24582 -12.08807 -11.97036 -11.66592 -11.61540 -11.08691 -10.96906 -10.87301 -10.66291 -10.62616 -10.32316 -9.98129 -9.87385 -9.52598 -9.09050 -9.02280 -8.69495 -8.49456 -6.14400 -4.14311 2.15167 2.66399 3.23352 3.31380 3.35885 3.40674 4.37731 4.52484 4.76238 4.84640 5.04213 5.15522 5.26294 5.30040 5.61353 5.64235 5.66255 5.71328 5.80292 5.84626 5.87481 5.90974 5.94641 6.01372 6.13076 6.14237 6.25356 6.32930 6.37613 6.44728 6.62348 6.64609 6.84062 6.88519 7.06456 7.18062 7.68161 8.31262 8.47568 8.89524 9.48432 10.97351 Molecular weight = 252.15amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.007028 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.358603 B = 3983.253182 C = 4239.918719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.020 4.020 5 C -0.142 4.142 6 C -0.141 4.141 7 C 0.465 3.535 8 O -0.519 6.519 9 O -0.323 6.323 10 C 0.106 3.894 11 C -0.008 4.008 12 C -0.477 4.477 13 H 0.080 0.920 14 C 0.080 3.920 15 N -0.893 5.893 16 Si 0.858 3.142 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.248 1.248 20 C -0.175 4.175 21 C -0.182 4.182 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 5.353 0.689 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.094 4.094 3 C -0.176 4.176 4 C -0.021 4.021 5 C -0.199 4.199 6 C -0.198 4.198 7 C 0.308 3.692 8 O -0.408 6.408 9 O -0.238 6.238 10 C 0.033 3.967 11 C -0.009 4.009 12 C -0.514 4.514 13 H 0.098 0.902 14 C -0.123 4.123 15 N -0.530 5.530 16 Si 0.685 3.315 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.172 1.172 20 C -0.212 4.212 21 C -0.220 4.220 22 H 0.123 0.877 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.425 5.631 0.528 13.652 hybrid contribution 0.508 0.954 -0.746 1.313 sum -11.917 6.585 -0.218 13.617 Atomic orbital electron populations 1.23782 0.94967 1.02182 1.02911 1.21345 0.94998 0.94158 0.98884 1.20890 0.99838 0.93803 1.03043 1.19499 0.94791 0.95218 0.92638 1.21935 0.98317 0.97291 1.02407 1.21872 0.99145 1.04222 0.94531 1.23449 0.78678 0.80509 0.86609 1.90579 1.64684 1.38650 1.46932 1.86569 1.49874 1.38641 1.48688 1.22933 0.89737 0.99560 0.84486 1.19335 0.98428 0.90045 0.93066 1.20212 1.03539 1.15180 1.12452 0.90196 1.24905 0.96248 0.96475 0.94644 1.69895 1.15710 1.41479 1.25901 0.87157 0.78045 0.82456 0.83870 1.20584 1.21395 1.17192 1.22787 0.94327 0.98588 1.05548 1.23083 0.99299 1.04013 0.95594 0.87691 0.88272 0.90321 0.92158 0.91961 0.90296 0.91028 0.92089 0.91944 0.91227 0.89838 0.92250 0.93302 0.92533 0.89316 0.90877 0.91119 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 13.29 29.01 0.39 -1.93 16 2 C -0.09 -1.28 4.44 -101.07 -0.45 -1.73 16 3 C -0.12 -1.59 9.11 36.00 0.33 -1.26 16 4 C -0.02 -0.31 0.82 -156.81 -0.13 -0.43 16 5 C -0.14 -1.80 7.04 37.16 0.26 -1.54 16 6 C -0.14 -2.01 8.29 37.16 0.31 -1.70 16 7 C 0.46 9.01 6.45 36.00 0.23 9.24 16 8 O -0.52 -10.95 14.33 -18.75 -0.27 -11.22 16 9 O -0.32 -7.01 9.94 -39.25 -0.39 -7.40 16 10 C 0.11 2.41 5.02 37.16 0.19 2.60 16 11 C -0.01 -0.18 1.07 -155.66 -0.17 -0.35 16 12 C -0.48 -13.14 9.32 -34.44 -0.32 -13.46 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.08 2.26 5.46 -17.82 -0.10 2.17 16 15 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 16 Si 0.86 21.24 25.05 -169.99 -4.26 16.98 16 17 H -0.28 -6.99 7.04 56.52 0.40 -6.59 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.25 -5.74 5.65 56.52 0.32 -5.42 16 20 C -0.18 -3.54 9.96 -26.69 -0.27 -3.80 16 21 C -0.18 -3.80 7.92 -26.69 -0.21 -4.01 16 22 H 0.10 1.08 5.69 -52.49 -0.30 0.78 16 23 H 0.10 0.99 8.04 -52.48 -0.42 0.57 16 24 H 0.08 1.17 7.36 -51.93 -0.38 0.79 16 25 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 26 H 0.06 0.85 6.59 -51.93 -0.34 0.50 16 27 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 28 H 0.07 0.73 7.40 -51.93 -0.38 0.34 16 29 H 0.06 0.75 7.59 -51.93 -0.39 0.35 16 30 H 0.06 0.91 6.71 -51.93 -0.35 0.56 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.06 1.44 5.20 -51.93 -0.27 1.17 16 34 H 0.05 1.03 7.94 -51.92 -0.41 0.61 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -30.54 315.12 -5.60 -36.14 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.27 Total: 2.91 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 0.06 Total: -16.21 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.66 Total: -18.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.26 Total: 16.98 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.54 -5.60 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820139355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.523 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds