Wall clock time and date at job start Sun Mar 29 2020 23:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48504 * 109.46747 * 269.99752 * 3 2 1 5 5 H 1.48496 * 109.47360 * 29.99427 * 3 2 1 6 6 H 1.48492 * 109.47390 * 150.00303 * 3 2 1 7 7 C 1.38951 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00011 * 180.27207 * 7 2 1 10 10 C 1.34775 * 120.00128 * 179.72677 * 9 7 2 11 11 O 1.21294 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00192 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47217 * 173.74697 * 12 10 9 14 14 C 1.47663 * 111.00253 * 293.64124 * 13 12 10 15 15 C 1.52579 * 111.72682 * 178.48094 * 14 13 12 16 16 C 1.53875 * 111.27060 * 53.64001 * 15 14 13 17 17 C 1.51818 * 106.90259 * 304.75893 * 16 15 14 18 18 H 1.08997 * 109.88125 * 303.16336 * 17 16 15 19 19 C 1.52565 * 116.26849 * 177.57797 * 17 16 15 20 20 C 1.54896 * 105.36743 * 214.11347 * 19 17 16 21 21 C 1.55301 * 106.37607 * 3.45617 * 20 19 17 22 22 C 1.45462 * 110.99853 * 172.64234 * 13 12 10 23 23 H 1.09001 * 110.17082 * 68.92435 * 22 13 12 24 24 H 0.96997 * 119.99797 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00196 * 359.73492 * 9 7 2 26 26 H 1.08994 * 109.47070 * 293.75460 * 12 10 9 27 27 H 1.09004 * 109.46786 * 53.75127 * 12 10 9 28 28 H 1.08997 * 109.02800 * 299.06302 * 14 13 12 29 29 H 1.08996 * 109.02742 * 57.90154 * 14 13 12 30 30 H 1.08996 * 109.12096 * 174.10244 * 15 14 13 31 31 H 1.09005 * 109.11905 * 293.23720 * 15 14 13 32 32 H 1.08996 * 109.96933 * 64.10828 * 16 15 14 33 33 H 1.09000 * 109.96607 * 185.33110 * 16 15 14 34 34 H 1.08997 * 110.26471 * 333.08273 * 19 17 16 35 35 H 1.08992 * 110.26317 * 95.05149 * 19 17 16 36 36 H 1.09004 * 110.07207 * 122.68316 * 20 19 17 37 37 H 1.08999 * 110.07574 * 244.17077 * 20 19 17 38 38 H 1.09005 * 110.71993 * 142.27679 * 21 20 19 39 39 H 1.09000 * 110.71806 * 265.36818 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0062 10 6 4.0537 -2.3705 0.0123 11 8 3.4473 -3.4210 0.0123 12 6 5.5607 -2.3705 0.0190 13 7 6.0497 -3.7469 0.1757 14 6 5.6990 -4.2850 1.5053 15 6 6.1668 -5.7277 1.6721 16 6 7.6680 -5.8669 1.3642 17 6 7.8858 -5.3108 -0.0315 18 1 7.2514 -5.8382 -0.7438 19 6 9.3262 -5.2923 -0.5339 20 6 9.4376 -4.0229 -1.4145 21 6 8.0667 -3.2999 -1.3159 22 6 7.4940 -3.8085 0.0141 23 1 7.9873 -3.3151 0.8516 24 1 -0.4850 0.8400 -0.0004 25 1 3.8649 -0.3633 0.0059 26 1 5.9283 -1.9591 -0.9209 27 1 5.9203 -1.7607 0.8479 28 1 6.1668 -3.6686 2.2729 29 1 4.6169 -4.2456 1.6305 30 1 5.9816 -6.0468 2.6977 31 1 5.6031 -6.3667 0.9923 32 1 8.2507 -5.2962 2.0873 33 1 7.9590 -6.9168 1.3975 34 1 10.0182 -5.2310 0.3060 35 1 9.5307 -6.1837 -1.1267 36 1 10.2299 -3.3753 -1.0388 37 1 9.6412 -4.3014 -2.4484 38 1 8.2018 -2.2185 -1.2922 39 1 7.4184 -3.5880 -2.1434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075769310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:16 Heat of formation + Delta-G solvation = -40.759688 kcal Electronic energy + Delta-G solvation = -19233.327834 eV Core-core repulsion = 16368.112963 eV Total energy + Delta-G solvation = -2865.214871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08402 -38.14858 -35.30824 -33.90977 -33.34851 -31.61655 -28.64673 -28.22367 -26.97670 -24.45346 -22.66786 -21.28821 -20.18269 -19.68979 -19.19659 -18.11922 -16.27516 -15.38137 -15.19903 -14.95434 -14.74386 -14.47460 -14.05681 -13.61784 -13.38096 -13.24318 -12.81932 -12.66673 -12.45881 -12.10858 -11.76147 -11.52533 -11.24320 -11.14924 -10.96670 -10.72850 -10.67825 -10.57715 -10.40114 -10.26540 -10.00550 -9.92820 -9.49748 -8.48121 -8.14522 -7.92893 -6.28425 -3.79417 3.04227 3.08579 3.16452 3.78965 3.97651 4.12619 4.40575 4.64626 4.76402 4.84016 5.08743 5.23119 5.25328 5.26718 5.39392 5.46649 5.49775 5.57191 5.59671 5.69942 5.79287 5.81109 5.88494 5.91368 5.98086 5.99380 6.05105 6.14280 6.20271 6.29597 6.33510 6.50538 6.57757 7.27342 7.43879 7.63099 8.18046 8.64094 8.98706 9.46043 9.88156 10.84896 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034366 B = 0.005254 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.574751 B = 5328.452532 C = 5855.740924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.453 3.547 11 O -0.557 6.557 12 C 0.039 3.961 13 N -0.492 5.492 14 C 0.050 3.950 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.090 4.090 18 H 0.084 0.916 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.070 3.930 23 H 0.040 0.960 24 H 0.273 0.727 25 H 0.370 0.630 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.543 -5.582 0.850 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.439 6.439 12 C -0.092 4.092 13 N -0.216 5.216 14 C -0.077 4.077 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.109 4.109 18 H 0.102 0.898 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.039 4.039 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.202 0.798 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.664 -6.475 0.480 19.761 hybrid contribution 0.921 2.066 0.647 2.353 sum 19.585 -4.409 1.128 20.107 Atomic orbital electron populations 1.69623 1.05620 1.27415 1.49668 1.25025 0.95469 0.97907 0.97757 0.86684 0.79749 0.84139 0.78892 1.19608 1.20223 1.19584 1.19427 0.79262 0.96595 1.47893 0.86293 1.42238 1.07512 1.06167 1.67424 1.19685 0.88132 0.84502 0.83779 1.90542 1.69373 1.30804 1.53162 1.21943 0.95436 0.90160 1.01699 1.62147 1.09921 1.18912 1.30609 1.22253 1.03178 0.94549 0.87761 1.21568 0.95331 0.96918 1.01299 1.21501 0.96663 1.00486 0.96105 1.21704 0.95912 0.95959 0.97321 0.89795 1.21914 0.96536 0.97855 0.99079 1.22415 0.96989 0.96482 0.99870 1.22249 0.96192 0.99346 0.97724 1.22394 0.88303 0.96409 0.96801 0.94201 0.91672 0.79784 0.89069 0.93734 0.96078 0.88366 0.91830 0.91095 0.92441 0.92006 0.92031 0.91773 0.92057 0.91739 0.91858 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.59 27.74 -169.99 -4.72 14.88 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.52 6.51 56.52 0.37 -5.15 16 7 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.39 5.09 -10.96 -0.06 -14.44 16 10 C 0.45 10.51 7.35 -10.98 -0.08 10.43 16 11 O -0.56 -15.08 14.24 5.55 0.08 -15.00 16 12 C 0.04 0.69 5.31 -4.97 -0.03 0.66 16 13 N -0.49 -8.23 4.42 -227.04 -1.00 -9.23 16 14 C 0.05 0.82 5.01 -3.62 -0.02 0.80 16 15 C -0.11 -1.52 5.99 -26.49 -0.16 -1.68 16 16 C -0.11 -1.24 5.69 -26.88 -0.15 -1.39 16 17 C -0.09 -1.07 2.41 -90.21 -0.22 -1.29 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.12 -1.11 6.51 -25.95 -0.17 -1.28 16 20 C -0.12 -1.13 6.88 -24.51 -0.17 -1.30 16 21 C -0.12 -1.36 5.54 -25.26 -0.14 -1.50 16 22 C 0.07 0.93 1.94 -67.01 -0.13 0.80 16 23 H 0.04 0.53 7.96 -51.93 -0.41 0.12 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 26 H 0.09 1.43 7.13 -51.93 -0.37 1.06 16 27 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.10 1.96 6.08 -51.93 -0.32 1.64 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -31.54 302.65 -8.24 -39.78 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.37 Total: 8.19 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.51 Total: -3.50 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.29 Total: -48.92 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.08 Total: -15.00 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.72 Total: 14.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.54 -8.24 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075769310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.976 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds