Wall clock time and date at job start Sun Mar 29 2020 23:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48504 * 109.46747 * 269.99752 * 3 2 1 5 5 H 1.48496 * 109.47360 * 29.99427 * 3 2 1 6 6 H 1.48492 * 109.47390 * 150.00303 * 3 2 1 7 7 C 1.38951 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00011 * 180.27207 * 7 2 1 10 10 C 1.34775 * 120.00128 * 179.72677 * 9 7 2 11 11 O 1.21294 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00192 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47217 * 173.74697 * 12 10 9 14 14 C 1.47663 * 111.00253 * 293.64124 * 13 12 10 15 15 C 1.52579 * 111.72682 * 178.48094 * 14 13 12 16 16 C 1.53875 * 111.27060 * 53.64001 * 15 14 13 17 17 C 1.51818 * 106.90259 * 304.75893 * 16 15 14 18 18 H 1.08997 * 109.88125 * 303.16336 * 17 16 15 19 19 C 1.52565 * 116.26849 * 177.57797 * 17 16 15 20 20 C 1.54896 * 105.36743 * 214.11347 * 19 17 16 21 21 C 1.55301 * 106.37607 * 3.45617 * 20 19 17 22 22 C 1.45462 * 110.99853 * 172.64234 * 13 12 10 23 23 H 1.09001 * 110.17082 * 68.92435 * 22 13 12 24 24 H 0.96997 * 119.99797 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00196 * 359.73492 * 9 7 2 26 26 H 1.08994 * 109.47070 * 293.75460 * 12 10 9 27 27 H 1.09004 * 109.46786 * 53.75127 * 12 10 9 28 28 H 1.08997 * 109.02800 * 299.06302 * 14 13 12 29 29 H 1.08996 * 109.02742 * 57.90154 * 14 13 12 30 30 H 1.08996 * 109.12096 * 174.10244 * 15 14 13 31 31 H 1.09005 * 109.11905 * 293.23720 * 15 14 13 32 32 H 1.08996 * 109.96933 * 64.10828 * 16 15 14 33 33 H 1.09000 * 109.96607 * 185.33110 * 16 15 14 34 34 H 1.08997 * 110.26471 * 333.08273 * 19 17 16 35 35 H 1.08992 * 110.26317 * 95.05149 * 19 17 16 36 36 H 1.09004 * 110.07207 * 122.68316 * 20 19 17 37 37 H 1.08999 * 110.07574 * 244.17077 * 20 19 17 38 38 H 1.09005 * 110.71993 * 142.27679 * 21 20 19 39 39 H 1.09000 * 110.71806 * 265.36818 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0062 10 6 4.0537 -2.3705 0.0123 11 8 3.4473 -3.4210 0.0123 12 6 5.5607 -2.3705 0.0190 13 7 6.0497 -3.7469 0.1757 14 6 5.6990 -4.2850 1.5053 15 6 6.1668 -5.7277 1.6721 16 6 7.6680 -5.8669 1.3642 17 6 7.8858 -5.3108 -0.0315 18 1 7.2514 -5.8382 -0.7438 19 6 9.3262 -5.2923 -0.5339 20 6 9.4376 -4.0229 -1.4145 21 6 8.0667 -3.2999 -1.3159 22 6 7.4940 -3.8085 0.0141 23 1 7.9873 -3.3151 0.8516 24 1 -0.4850 0.8400 -0.0004 25 1 3.8649 -0.3633 0.0059 26 1 5.9283 -1.9591 -0.9209 27 1 5.9203 -1.7607 0.8479 28 1 6.1668 -3.6686 2.2729 29 1 4.6169 -4.2456 1.6305 30 1 5.9816 -6.0468 2.6977 31 1 5.6031 -6.3667 0.9923 32 1 8.2507 -5.2962 2.0873 33 1 7.9590 -6.9168 1.3975 34 1 10.0182 -5.2310 0.3060 35 1 9.5307 -6.1837 -1.1267 36 1 10.2299 -3.3753 -1.0388 37 1 9.6412 -4.3014 -2.4484 38 1 8.2018 -2.2185 -1.2922 39 1 7.4184 -3.5880 -2.1434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075769310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:16 Heat of formation + Delta-G solvation = -63.314420 kcal Electronic energy + Delta-G solvation = -19234.305881 eV Core-core repulsion = 16368.112963 eV Total energy + Delta-G solvation = -2866.192918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25567 -39.89637 -36.52667 -35.80436 -34.53412 -33.72709 -29.74056 -29.39317 -28.17993 -26.27412 -23.86711 -22.36213 -21.45528 -20.94528 -20.66570 -19.96937 -17.86164 -16.84338 -16.66523 -16.26882 -16.07156 -15.72208 -15.33777 -15.04586 -14.95701 -14.43430 -14.31369 -14.07238 -13.75440 -13.58736 -13.13053 -12.84819 -12.69995 -12.42660 -12.06631 -12.02736 -11.96221 -11.73247 -11.61760 -11.51295 -11.30017 -11.16355 -10.99529 -10.32847 -10.23844 -9.23380 -8.42064 -6.02752 1.28722 1.34322 1.43039 1.94572 2.21961 2.63259 3.12817 3.17182 3.51412 3.78355 3.90691 4.04959 4.16939 4.28680 4.33701 4.34627 4.39572 4.48579 4.51542 4.62802 4.65181 4.74783 4.90487 4.96169 5.03553 5.05318 5.15479 5.24098 5.27185 5.31611 5.37167 5.47332 5.53610 5.62687 5.91195 6.03997 6.30848 6.59761 6.87717 7.38980 7.96569 8.75776 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034366 B = 0.005254 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.574751 B = 5328.452532 C = 5855.740924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.328 4.328 8 H 0.054 0.946 9 N -0.593 5.593 10 C 0.451 3.549 11 O -0.605 6.605 12 C 0.051 3.949 13 N -0.515 5.515 14 C 0.051 3.949 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.089 4.089 18 H 0.059 0.941 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.119 4.119 22 C 0.066 3.934 23 H 0.051 0.949 24 H 0.279 0.721 25 H 0.389 0.611 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.792 -3.930 1.059 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.457 4.457 8 H 0.073 0.927 9 N -0.235 5.235 10 C 0.239 3.761 11 O -0.488 6.488 12 C -0.080 4.080 13 N -0.239 5.239 14 C -0.076 4.076 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.108 4.108 18 H 0.078 0.922 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.042 4.042 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.224 0.776 26 H 0.135 0.865 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.946 -4.838 0.688 23.461 hybrid contribution -0.500 1.408 0.578 1.602 sum 22.446 -3.430 1.266 22.741 Atomic orbital electron populations 1.69805 1.08113 1.29238 1.50393 1.26096 0.96452 1.02637 0.96070 0.85376 0.79400 0.76803 0.80016 1.18019 1.19867 1.15711 1.18995 0.81419 0.94927 1.50338 0.92739 1.42058 1.05859 1.07515 1.68068 1.20870 0.90727 0.83344 0.81144 1.90526 1.71218 1.32626 1.54472 1.21862 0.90414 0.91680 1.04039 1.62113 1.12617 1.18362 1.30826 1.22159 1.00417 0.96740 0.88315 1.21548 0.97125 0.94543 1.01664 1.21461 0.94539 1.01881 0.96038 1.21712 0.97226 0.94716 0.97143 0.92239 1.21897 0.94772 0.98411 0.99701 1.22406 0.95918 0.96352 1.00522 1.22290 0.97053 1.00355 0.95954 1.22543 0.85814 0.97758 0.98121 0.93140 0.91127 0.77605 0.86550 0.91040 0.94794 0.93106 0.90438 0.93198 0.90990 0.90249 0.90493 0.90913 0.90399 0.90972 0.90682 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.96 39.43 27.74 68.60 1.90 41.34 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.23 -8.12 6.51 99.48 0.65 -7.47 16 7 C -0.33 -19.62 10.16 84.04 0.85 -18.77 16 8 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 9 N -0.59 -28.95 5.09 -306.98 -1.56 -30.51 16 10 C 0.45 21.37 7.35 87.66 0.64 22.02 16 11 O -0.60 -34.75 14.24 -3.07 -0.04 -34.79 16 12 C 0.05 1.72 5.31 85.56 0.45 2.18 16 13 N -0.51 -16.84 4.42 -872.21 -3.86 -20.70 16 14 C 0.05 1.69 5.01 86.02 0.43 2.12 16 15 C -0.11 -2.95 5.99 30.75 0.18 -2.76 16 16 C -0.10 -2.04 5.69 30.50 0.17 -1.87 16 17 C -0.09 -1.92 2.41 -10.53 -0.03 -1.94 16 18 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 19 C -0.11 -1.70 6.51 31.10 0.20 -1.50 16 20 C -0.11 -1.72 6.88 32.03 0.22 -1.50 16 21 C -0.12 -2.41 5.54 31.54 0.17 -2.23 16 22 C 0.07 1.59 1.94 46.14 0.09 1.68 16 23 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 24 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.39 15.77 5.76 -92.70 -0.53 15.24 16 26 H 0.12 3.35 7.13 -2.39 -0.02 3.33 16 27 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 28 H 0.03 1.01 8.09 -2.39 -0.02 0.99 16 29 H 0.05 2.15 6.08 -2.39 -0.01 2.13 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 0.99 8.06 -2.39 -0.02 0.98 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.34 8.07 -2.38 -0.02 1.32 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -74.92 302.65 1.05 -73.88 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.43 Total: 30.50 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 3.87 Total: -2.90 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -5.12 Total: -108.02 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.04 Total: -34.79 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.34 kcal Total: -74.92 1.05 -73.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075769310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.561 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds