Wall clock time and date at job start Sun Mar 29 2020 23:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21273 * 119.99996 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99675 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46889 * 180.02562 * 16 14 13 18 18 C 1.52995 * 117.49949 * 243.62086 * 17 16 14 19 19 C 1.53000 * 60.00117 * 252.51234 * 18 17 16 20 20 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 21 21 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 22 22 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 24 24 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 25 25 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 26 26 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 27 27 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 28 28 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 29 29 H 1.08998 * 109.47131 * 300.00301 * 16 14 13 30 30 H 1.08991 * 109.47148 * 60.00419 * 16 14 13 31 31 H 1.08999 * 115.54857 * 29.33409 * 17 16 14 32 32 H 1.09008 * 117.49760 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49883 * 145.01600 * 18 17 16 34 34 H 1.09005 * 117.49513 * 252.51134 * 19 18 17 35 35 H 1.09000 * 117.49996 * 107.49264 * 19 18 17 36 36 H 1.09002 * 109.49848 * 178.74812 * 20 12 11 37 37 H 1.08999 * 109.49849 * 58.64620 * 20 12 11 38 38 H 1.09004 * 109.59094 * 246.19900 * 21 9 7 39 39 H 1.09001 * 109.59077 * 6.49172 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5951 -0.9854 -3.4494 16 6 7.8611 -2.7947 -4.9412 17 6 8.9917 -1.9274 -5.4984 18 6 8.8558 -1.4294 -6.9386 19 6 9.8652 -2.5285 -6.6013 20 6 4.8755 -2.9898 -1.0921 21 6 4.2351 -2.2628 0.0946 22 1 -0.4850 0.8401 0.0004 23 1 2.9908 0.3501 -1.7559 24 1 4.5579 0.3822 -0.9097 25 1 3.7035 -1.5726 -3.0945 26 1 4.9277 -0.2876 -3.2372 27 1 6.2781 -1.3980 -1.4672 28 1 5.8557 -3.5342 -3.4126 29 1 8.2692 -3.7437 -4.5934 30 1 7.1258 -2.9805 -5.7239 31 1 9.4737 -1.2647 -4.7797 32 1 7.9607 -1.7193 -7.4891 33 1 9.2482 -0.4386 -7.1677 34 1 10.9219 -2.2609 -6.6085 35 1 9.6345 -3.5419 -6.9300 36 1 5.6320 -3.6849 -0.7278 37 1 4.1091 -3.5392 -1.6388 38 1 5.0116 -1.7874 0.6940 39 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104347708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:47 Heat of formation + Delta-G solvation = 2.073351 kcal Electronic energy + Delta-G solvation = -18800.051046 eV Core-core repulsion = 15936.693555 eV Total energy + Delta-G solvation = -2863.357491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91638 -37.94945 -36.97280 -34.52870 -32.24273 -30.64034 -30.39363 -28.98743 -24.92515 -22.85132 -22.59877 -22.23895 -20.96323 -20.14189 -19.50330 -17.28345 -16.71590 -16.21898 -15.53113 -15.17134 -14.75657 -14.23770 -14.17451 -13.75869 -13.50665 -13.33113 -12.91040 -12.53684 -12.34060 -11.92809 -11.79992 -11.73522 -11.61526 -11.04934 -10.83930 -10.60103 -10.57310 -10.22986 -10.15545 -10.04909 -9.94512 -9.57839 -9.48847 -8.79816 -8.59754 -6.99084 -5.94873 -3.30939 2.74064 3.23639 3.35698 3.51184 3.55155 3.63463 4.48196 4.54628 4.60900 4.71291 4.92244 4.96918 5.16275 5.25036 5.30081 5.35581 5.40150 5.44692 5.47812 5.66689 5.68543 5.82811 5.88712 6.03741 6.09040 6.13992 6.17357 6.33103 6.43320 6.56731 6.64623 6.68268 6.77265 6.92331 7.64298 7.96066 8.32489 8.35355 8.93712 9.72265 10.09783 11.20966 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.004653 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.066581 B = 6015.605496 C = 6393.045976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.150 3.850 13 N -0.727 5.727 14 C 0.511 3.489 15 O -0.540 6.540 16 C -0.111 4.111 17 C -0.139 4.139 18 C -0.179 4.179 19 C -0.182 4.182 20 C -0.140 4.140 21 C 0.152 3.848 22 H 0.263 0.737 23 H 0.074 0.926 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.396 0.604 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.351 -8.061 -10.923 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.002 3.998 11 C -0.181 4.181 12 C 0.046 3.954 13 N -0.377 5.377 14 C 0.297 3.703 15 O -0.417 6.417 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.216 4.216 19 C -0.219 4.219 20 C -0.180 4.180 21 C 0.025 3.975 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.230 0.770 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.461 -7.178 -10.633 20.870 hybrid contribution 0.187 0.558 -0.250 0.639 sum 16.647 -6.621 -10.883 20.962 Atomic orbital electron populations 1.69838 1.05736 1.26590 1.52980 1.25273 0.95221 0.97615 0.99382 0.86971 0.80077 0.84624 0.77123 1.21579 1.23100 1.19483 1.18917 0.84934 0.94776 1.40329 0.89637 1.44400 1.08651 1.33386 1.46610 1.21308 0.97216 0.92020 0.89213 1.22385 0.97582 0.98692 0.99403 1.20981 0.94375 0.93675 0.86332 1.46293 1.34420 1.22113 1.34874 1.20547 0.79871 0.86273 0.83559 1.90690 1.63808 1.20562 1.66631 1.21233 0.97618 0.99247 0.97012 1.22055 0.99278 1.02270 0.92118 1.23029 1.01326 0.98975 0.98235 1.22995 0.96970 0.98339 1.03621 1.22323 0.99518 0.97619 0.98533 1.20864 0.92478 0.91486 0.92687 0.92755 0.90771 0.95524 0.91701 0.92386 0.90029 0.77008 0.88677 0.88943 0.86407 0.88847 0.88793 0.88779 0.88842 0.92161 0.91388 0.95744 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.87 24.34 -169.99 -4.14 18.74 16 4 H -0.29 -7.28 6.62 56.52 0.37 -6.91 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 6 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 7 C -0.26 -7.31 10.03 -15.06 -0.15 -7.46 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.46 2.77 -172.32 -0.48 -14.93 16 10 C 0.13 2.91 4.20 -3.71 -0.02 2.90 16 11 C -0.14 -2.64 5.66 -26.59 -0.15 -2.80 16 12 C 0.15 2.43 2.41 -67.87 -0.16 2.27 16 13 N -0.73 -9.30 5.08 -53.75 -0.27 -9.57 16 14 C 0.51 6.94 7.79 -10.98 -0.09 6.86 16 15 O -0.54 -9.68 15.22 5.56 0.08 -9.60 16 16 C -0.11 -1.04 5.98 -27.88 -0.17 -1.21 16 17 C -0.14 -1.40 5.41 -90.62 -0.49 -1.89 16 18 C -0.18 -1.61 10.18 -26.73 -0.27 -1.88 16 19 C -0.18 -1.43 10.25 -26.73 -0.27 -1.70 16 20 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 21 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.07 1.84 4.49 -51.93 -0.23 1.60 16 24 H 0.03 0.61 7.07 -51.93 -0.37 0.25 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 28 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.72 7.88 -51.93 -0.41 0.31 16 31 H 0.12 1.44 7.30 -51.93 -0.38 1.06 16 32 H 0.09 0.77 8.03 -51.92 -0.42 0.35 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -32.78 309.50 -7.78 -40.55 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.38 Total: 1.08 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.03 Total: -3.72 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.02 Total: -51.72 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.78 -7.78 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.626 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds