Wall clock time and date at job start Sun Mar 29 2020 23:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21273 * 119.99996 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99675 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46889 * 180.02562 * 16 14 13 18 18 C 1.52995 * 117.49949 * 243.62086 * 17 16 14 19 19 C 1.53000 * 60.00117 * 252.51234 * 18 17 16 20 20 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 21 21 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 22 22 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 24 24 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 25 25 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 26 26 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 27 27 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 28 28 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 29 29 H 1.08998 * 109.47131 * 300.00301 * 16 14 13 30 30 H 1.08991 * 109.47148 * 60.00419 * 16 14 13 31 31 H 1.08999 * 115.54857 * 29.33409 * 17 16 14 32 32 H 1.09008 * 117.49760 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49883 * 145.01600 * 18 17 16 34 34 H 1.09005 * 117.49513 * 252.51134 * 19 18 17 35 35 H 1.09000 * 117.49996 * 107.49264 * 19 18 17 36 36 H 1.09002 * 109.49848 * 178.74812 * 20 12 11 37 37 H 1.08999 * 109.49849 * 58.64620 * 20 12 11 38 38 H 1.09004 * 109.59094 * 246.19900 * 21 9 7 39 39 H 1.09001 * 109.59077 * 6.49172 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5951 -0.9854 -3.4494 16 6 7.8611 -2.7947 -4.9412 17 6 8.9917 -1.9274 -5.4984 18 6 8.8558 -1.4294 -6.9386 19 6 9.8652 -2.5285 -6.6013 20 6 4.8755 -2.9898 -1.0921 21 6 4.2351 -2.2628 0.0946 22 1 -0.4850 0.8401 0.0004 23 1 2.9908 0.3501 -1.7559 24 1 4.5579 0.3822 -0.9097 25 1 3.7035 -1.5726 -3.0945 26 1 4.9277 -0.2876 -3.2372 27 1 6.2781 -1.3980 -1.4672 28 1 5.8557 -3.5342 -3.4126 29 1 8.2692 -3.7437 -4.5934 30 1 7.1258 -2.9805 -5.7239 31 1 9.4737 -1.2647 -4.7797 32 1 7.9607 -1.7193 -7.4891 33 1 9.2482 -0.4386 -7.1677 34 1 10.9219 -2.2609 -6.6085 35 1 9.6345 -3.5419 -6.9300 36 1 5.6320 -3.6849 -0.7278 37 1 4.1091 -3.5392 -1.6388 38 1 5.0116 -1.7874 0.6940 39 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104347708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:46 Heat of formation + Delta-G solvation = -20.454212 kcal Electronic energy + Delta-G solvation = -18801.027915 eV Core-core repulsion = 15936.693555 eV Total energy + Delta-G solvation = -2864.334360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05218 -39.31871 -37.89331 -36.02516 -34.08795 -32.15951 -31.98357 -30.04620 -26.72633 -24.46297 -23.82475 -23.20437 -22.01718 -21.38524 -20.73194 -18.92894 -18.07551 -17.59447 -16.90095 -16.35465 -15.97332 -15.94982 -15.37447 -15.06149 -14.95769 -14.61020 -14.44773 -14.09348 -13.92061 -13.45257 -13.34910 -12.70306 -12.58137 -12.38351 -12.29774 -12.24047 -12.06103 -11.77588 -11.50391 -11.46560 -11.28659 -10.95190 -10.82468 -10.64766 -10.00289 -8.98771 -8.19441 -5.50580 1.27003 1.37687 1.46151 1.70939 2.21208 2.38472 2.95164 3.02126 3.31745 3.73790 3.79564 3.84578 3.93547 4.07795 4.20170 4.22698 4.29596 4.44510 4.57798 4.66117 4.67608 4.70733 4.79211 4.81929 4.87651 4.94224 5.01234 5.06887 5.07349 5.14403 5.28465 5.36611 5.42621 5.56682 5.85038 6.11096 6.65659 6.88471 7.35228 7.59262 8.00804 9.00229 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038187 B = 0.004653 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.066581 B = 6015.605496 C = 6393.045976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.030 4.030 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.308 1.308 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.620 5.620 10 C 0.126 3.874 11 C -0.130 4.130 12 C 0.158 3.842 13 N -0.713 5.713 14 C 0.507 3.493 15 O -0.589 6.589 16 C -0.099 4.099 17 C -0.161 4.161 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.124 4.124 21 C 0.142 3.858 22 H 0.262 0.738 23 H 0.049 0.951 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.416 0.584 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.446 -9.965 -12.338 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.225 4.225 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.236 1.236 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.080 0.920 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.170 4.170 12 C 0.053 3.947 13 N -0.365 5.365 14 C 0.295 3.705 15 O -0.469 6.469 16 C -0.138 4.138 17 C -0.180 4.180 18 C -0.225 4.225 19 C -0.197 4.197 20 C -0.163 4.163 21 C 0.017 3.983 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.253 0.747 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.602 -9.136 -12.072 23.984 hybrid contribution -0.414 1.089 0.191 1.180 sum 18.187 -8.048 -11.880 23.166 Atomic orbital electron populations 1.69943 1.07135 1.27119 1.55793 1.25816 0.95749 1.00475 1.00508 0.86060 0.78772 0.81194 0.77271 1.20842 1.23629 1.19100 1.18927 0.86599 0.93713 1.38263 0.91997 1.44538 1.08030 1.34574 1.47286 1.21258 0.96347 0.92121 0.90293 1.22221 0.98167 0.98941 0.97656 1.20652 0.93174 0.93543 0.87306 1.46053 1.33965 1.22652 1.33795 1.21358 0.79377 0.85740 0.83981 1.90680 1.65182 1.22948 1.68125 1.21252 0.97492 0.99470 0.95610 1.21998 1.00601 1.03178 0.92184 1.23124 1.02401 0.99417 0.97561 1.23083 0.96828 0.98905 1.00882 1.22140 1.00244 0.97280 0.96672 1.21118 0.91948 0.90667 0.94556 0.92929 0.93279 0.95881 0.91639 0.92670 0.91797 0.74681 0.85686 0.86637 0.89372 0.87861 0.89491 0.88334 0.86712 0.88439 0.90884 0.95039 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.97 21.65 0.30 -59.93 16 2 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 3 Si 0.94 48.19 24.34 68.60 1.67 49.86 16 4 H -0.28 -13.98 6.62 99.48 0.66 -13.32 16 5 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 6 H -0.27 -13.34 6.64 99.48 0.66 -12.68 16 7 C -0.25 -13.86 10.03 84.03 0.84 -13.02 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.62 -29.17 2.77 -699.09 -1.94 -31.10 16 10 C 0.13 5.63 4.20 86.36 0.36 5.99 16 11 C -0.13 -4.72 5.66 30.68 0.17 -4.55 16 12 C 0.16 4.76 2.41 45.03 0.11 4.87 16 13 N -0.71 -15.96 5.08 -442.35 -2.25 -18.20 16 14 C 0.51 12.58 7.79 87.66 0.68 13.26 16 15 O -0.59 -20.73 15.22 -3.01 -0.05 -20.77 16 16 C -0.10 -1.50 5.98 29.85 0.18 -1.32 16 17 C -0.16 -2.94 5.41 -10.79 -0.06 -3.00 16 18 C -0.19 -3.00 10.18 30.59 0.31 -2.69 16 19 C -0.16 -2.02 10.25 30.59 0.31 -1.71 16 20 C -0.12 -3.42 5.55 30.67 0.17 -3.25 16 21 C 0.14 5.21 6.52 86.37 0.56 5.78 16 22 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.05 2.43 4.49 -2.39 -0.01 2.42 16 24 H 0.02 1.05 7.07 -2.38 -0.02 1.04 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 28 H 0.42 6.22 8.60 -92.71 -0.80 5.42 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 1.28 7.88 -2.39 -0.02 1.26 16 31 H 0.09 2.15 7.30 -2.39 -0.02 2.13 16 32 H 0.10 1.43 8.03 -2.38 -0.02 1.41 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -73.07 309.50 1.98 -71.10 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.14 Total: 10.06 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 4.09 Total: -1.01 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -3.88 Total: -109.23 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.67 Total: 49.86 kcal Total: -73.07 1.98 -71.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104347708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.642 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds