Wall clock time and date at job start Sun Mar 29 2020 23:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47068 * 136.06235 * 359.72727 * 9 7 2 11 11 C 1.53496 * 87.98822 * 152.84255 * 10 9 7 12 12 C 1.47067 * 136.05422 * 179.35203 * 9 7 2 13 13 H 1.08998 * 113.46779 * 92.38129 * 12 9 7 14 14 C 1.52997 * 113.47191 * 321.93430 * 12 9 7 15 15 N 1.46505 * 109.46811 * 74.50470 * 14 12 9 16 16 C 1.34779 * 119.99894 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99870 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00086 * 180.02562 * 16 15 14 19 19 C 1.52995 * 109.47157 * 179.97438 * 18 16 15 20 20 C 1.53781 * 113.61310 * 272.49043 * 19 18 16 21 21 C 1.53782 * 87.08413 * 220.02068 * 20 19 18 22 22 C 1.53782 * 113.61220 * 174.99850 * 19 18 16 23 23 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 24 24 H 1.09005 * 113.46183 * 267.62491 * 10 9 7 25 25 H 1.09005 * 113.46525 * 37.99796 * 10 9 7 26 26 H 1.08994 * 114.20352 * 139.65892 * 11 10 9 27 27 H 1.09001 * 114.20029 * 272.28069 * 11 10 9 28 28 H 1.08993 * 109.47810 * 194.50478 * 14 12 9 29 29 H 1.09003 * 109.47353 * 314.50983 * 14 12 9 30 30 H 0.96999 * 119.99858 * 0.02562 * 15 14 12 31 31 H 1.09003 * 109.46540 * 299.99687 * 18 16 15 32 32 H 1.08998 * 109.47211 * 59.98851 * 18 16 15 33 33 H 1.08994 * 112.84946 * 43.80133 * 19 18 16 34 34 H 1.08996 * 113.61360 * 334.57114 * 20 19 18 35 35 H 1.09001 * 113.60921 * 105.47095 * 20 19 18 36 36 H 1.08994 * 113.61383 * 270.89099 * 21 20 19 37 37 H 1.08995 * 113.68992 * 139.98952 * 21 20 19 38 38 H 1.09006 * 113.61192 * 254.52918 * 22 19 18 39 39 H 1.09004 * 113.61630 * 25.42773 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0878 -2.7948 -0.0089 11 6 0.3415 -4.0879 -0.7159 12 6 1.6798 -3.8153 -0.0209 13 1 1.7497 -4.2550 0.9740 14 6 2.8941 -4.1331 -0.8958 15 7 4.1142 -3.6885 -0.2176 16 6 5.3143 -3.8659 -0.8048 17 8 5.3841 -4.3940 -1.8944 18 6 6.5695 -3.4091 -0.1071 19 6 7.7838 -3.7268 -0.9820 20 6 8.3510 -5.1387 -0.7592 21 6 9.7496 -4.5101 -0.8762 22 6 9.1088 -3.1904 -0.4149 23 1 -0.4850 0.8401 0.0004 24 1 -0.4934 -2.9599 0.9893 25 1 -0.7229 -2.1545 -0.6212 26 1 -0.1734 -4.9817 -0.3639 27 1 0.3788 -4.0118 -1.8026 28 1 2.9458 -5.2079 -1.0691 29 1 2.7997 -3.6153 -1.8503 30 1 4.0584 -3.2665 0.6540 31 1 6.5178 -2.3343 0.0669 32 1 6.6639 -3.9274 0.8471 33 1 7.6258 -3.4788 -2.0315 34 1 8.1360 -5.5447 0.2292 35 1 8.1167 -5.8353 -1.5642 36 1 10.1296 -4.4774 -1.8972 37 1 10.4724 -4.9153 -0.1682 38 1 9.4863 -2.3141 -0.9419 39 1 9.1010 -3.0638 0.6677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699615607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:30 Heat of formation + Delta-G solvation = 27.309012 kcal Electronic energy + Delta-G solvation = -18691.081355 eV Core-core repulsion = 15828.818164 eV Total energy + Delta-G solvation = -2862.263191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76212 -38.53377 -37.75077 -33.94750 -32.23679 -30.63832 -28.04553 -27.37247 -25.63203 -23.64559 -23.48079 -21.76857 -20.08500 -19.38199 -19.17043 -17.07535 -16.36632 -15.82385 -15.49499 -15.27529 -14.74643 -14.37287 -14.03378 -13.69111 -13.32789 -13.01166 -12.65988 -12.49860 -11.89468 -11.81573 -11.56366 -11.36701 -11.11763 -10.97931 -10.79507 -10.67055 -10.57073 -10.34306 -10.20732 -9.99403 -9.84982 -9.53958 -9.14097 -8.82976 -8.50239 -6.91533 -5.78575 -3.11134 3.04960 3.36518 3.40694 3.43280 3.63876 4.41474 4.57832 4.61066 4.69763 4.83398 5.14454 5.24246 5.37305 5.39909 5.49347 5.57690 5.64550 5.66651 5.71158 5.79555 5.82268 5.90711 5.91871 6.03764 6.12835 6.24610 6.33618 6.40940 6.50658 6.59566 6.73406 6.95351 7.21403 7.38759 7.56112 7.95704 7.98196 8.65600 9.01082 9.68494 10.61635 11.38675 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.005571 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.839115 B = 5024.803360 C = 6141.590100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.162 4.162 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.553 6.553 18 C -0.134 4.134 19 C -0.092 4.092 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.139 4.139 23 H 0.253 0.747 24 H 0.025 0.975 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.402 0.598 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -8.750 1.569 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.201 4.201 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.295 3.705 17 O -0.432 6.432 18 C -0.174 4.174 19 C -0.111 4.111 20 C -0.171 4.171 21 C -0.180 4.180 22 C -0.177 4.177 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.418 -8.742 0.801 15.207 hybrid contribution 0.310 1.229 0.610 1.406 sum 12.727 -7.513 1.411 14.847 Atomic orbital electron populations 1.69827 1.04987 1.25270 1.56453 1.24776 0.95639 0.97425 1.02573 0.86176 0.78546 0.83696 0.77656 1.21566 1.21654 1.20729 1.18845 0.89998 0.81355 1.43902 0.90206 1.45646 1.02611 0.98557 1.85949 1.22035 0.88725 0.90249 0.96427 1.23608 0.97006 0.99055 1.00403 1.22357 0.92138 0.87750 0.95780 0.93500 1.21769 0.83277 0.98119 0.97135 1.46023 1.06137 1.61485 1.23006 1.20618 0.85033 0.78797 0.86015 1.90644 1.87278 1.44172 1.21066 1.21699 0.92743 1.03212 0.99719 1.22310 0.91847 0.96649 1.00302 1.22931 0.95588 0.96729 1.01857 1.22793 0.96708 0.97134 1.01378 1.22995 0.96347 0.97415 1.00929 0.93684 0.95755 0.90983 0.92359 0.90255 0.92484 0.91273 0.76355 0.88800 0.89230 0.88273 0.90491 0.91356 0.90359 0.91740 0.91532 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.50 55.49 0.64 -26.29 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.21 -5.71 10.55 -15.06 -0.16 -5.87 16 8 H 0.08 2.04 7.50 -52.49 -0.39 1.64 16 9 N -0.60 -14.65 3.65 -177.15 -0.65 -15.30 16 10 C 0.15 3.47 7.40 -8.51 -0.06 3.40 16 11 C -0.16 -2.96 8.01 -26.35 -0.21 -3.17 16 12 C 0.13 2.46 4.10 -72.53 -0.30 2.17 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.23 5.51 -4.04 -0.02 2.21 16 15 N -0.72 -12.18 5.33 -60.29 -0.32 -12.50 16 16 C 0.51 8.51 7.83 -10.98 -0.09 8.42 16 17 O -0.55 -11.03 15.76 5.56 0.09 -10.95 16 18 C -0.13 -1.69 5.54 -27.89 -0.15 -1.84 16 19 C -0.09 -1.12 3.15 -89.81 -0.28 -1.40 16 20 C -0.13 -1.47 7.63 -25.92 -0.20 -1.67 16 21 C -0.14 -1.34 8.08 -25.92 -0.21 -1.54 16 22 C -0.14 -1.36 7.64 -25.92 -0.20 -1.56 16 23 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.85 7.11 -51.93 -0.37 1.48 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.46 8.11 -51.93 -0.42 1.03 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.40 6.47 8.37 -40.82 -0.34 6.13 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.94 7.84 -51.93 -0.41 0.53 16 33 H 0.10 1.39 7.67 -51.93 -0.40 1.00 16 34 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -31.24 320.41 -8.94 -40.18 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.52 Total: 4.33 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.98 Total: -1.15 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.33 Total: -54.09 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.24 -8.94 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699615607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.488 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds