Wall clock time and date at job start Mon Mar 30 2020 00:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46600 * 119.68168 * 359.97438 * 5 3 2 7 7 C 1.53955 * 110.57539 * 227.83257 * 6 5 3 8 8 C 1.51516 * 107.34441 * 308.94164 * 7 6 5 9 9 H 1.08995 * 109.28386 * 306.98082 * 8 7 6 10 10 C 1.55375 * 107.79229 * 64.85864 * 8 7 6 11 11 H 1.08998 * 111.50476 * 51.18760 * 10 8 7 12 12 C 1.53743 * 100.21768 * 169.08512 * 10 8 7 13 13 C 1.55285 * 101.84749 * 320.90991 * 12 10 8 14 14 N 1.45463 * 117.35623 * 181.91084 * 8 7 6 15 15 C 1.36942 * 126.40264 * 30.64290 * 14 8 7 16 16 H 1.07998 * 120.00034 * 359.97438 * 15 14 8 17 17 C 1.38812 * 120.00041 * 180.02562 * 15 14 8 18 18 N 1.31623 * 119.99745 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47533 * 89.99399 * 19 17 15 21 21 H 1.48504 * 109.46782 * 209.99674 * 19 17 15 22 22 H 1.48507 * 109.46655 * 329.99082 * 19 17 15 23 23 C 1.47710 * 119.68476 * 179.73100 * 5 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09003 * 109.25474 * 348.11064 * 6 5 3 30 30 H 1.08994 * 109.25655 * 107.58659 * 6 5 3 31 31 H 1.09000 * 109.88373 * 68.40536 * 7 6 5 32 32 H 1.08998 * 109.88161 * 189.48940 * 7 6 5 33 33 H 1.08995 * 110.95765 * 202.76873 * 12 10 8 34 34 H 1.09003 * 110.98322 * 79.06529 * 12 10 8 35 35 H 1.08995 * 109.92338 * 263.13099 * 13 12 10 36 36 H 1.08999 * 109.92133 * 141.82323 * 13 12 10 37 37 H 0.97005 * 119.99478 * 180.02562 * 18 17 15 38 38 H 1.09003 * 110.06633 * 247.14799 * 23 5 3 39 39 H 1.08997 * 110.07412 * 8.72069 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3039 0.5477 -0.0005 7 6 5.3924 0.7596 1.0674 8 6 5.9626 2.1482 0.8618 9 1 6.2758 2.2587 -0.1763 10 6 4.8314 3.1735 1.1507 11 1 4.3565 2.9838 2.1132 12 6 5.6453 4.4775 1.1766 13 6 6.9420 4.0296 1.9042 14 7 7.0484 2.5613 1.7373 15 6 7.9927 1.7455 2.3013 16 1 7.9730 0.6830 2.1088 17 6 8.9747 2.2841 3.1214 18 7 8.9984 3.5790 3.3564 19 14 10.2632 1.1715 3.8902 20 1 11.4317 1.0646 2.9801 21 1 10.6987 1.7430 5.1899 22 1 9.6834 -0.1776 4.1121 23 6 3.8420 3.0625 -0.0065 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7671 -0.3769 0.2119 30 1 4.7730 0.4737 -0.9815 31 1 4.9553 0.6819 2.0628 32 1 6.1790 0.0146 0.9477 33 1 5.1265 5.2497 1.7446 34 1 5.8644 4.8211 0.1656 35 1 6.8788 4.2794 2.9632 36 1 7.8071 4.5180 1.4557 37 1 9.6849 3.9554 3.9292 38 1 4.3407 3.2812 -0.9508 39 1 3.0087 3.7486 0.1452 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036608317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:39 Heat of formation + Delta-G solvation = -13.806140 kcal Electronic energy + Delta-G solvation = -19482.673291 eV Core-core repulsion = 16618.627213 eV Total energy + Delta-G solvation = -2864.046078 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21465 -38.28734 -35.35765 -33.13476 -32.39592 -31.53641 -29.58608 -28.15326 -25.21197 -24.47080 -22.78011 -22.31485 -20.08187 -19.70226 -18.69963 -17.20484 -16.26967 -15.76247 -15.60647 -15.01252 -14.39248 -14.03404 -13.90293 -13.70506 -12.98941 -12.93064 -12.59910 -12.45101 -12.27812 -11.75499 -11.61728 -11.47197 -11.39868 -11.23561 -10.84695 -10.79711 -10.71923 -10.16186 -10.08844 -9.89897 -9.64402 -9.58946 -9.44375 -8.63687 -8.47190 -6.84957 -5.72867 -3.06185 2.74098 3.12756 3.38314 3.42999 3.45312 4.47284 4.55409 4.91894 4.99988 5.06014 5.08778 5.24697 5.34609 5.43213 5.55089 5.59455 5.62960 5.68467 5.80716 5.84843 5.90105 6.03769 6.12346 6.15858 6.18689 6.23575 6.36366 6.50750 6.61948 6.64154 6.84728 7.06353 7.53120 7.54736 7.60986 7.79843 8.23137 8.29460 9.17931 9.81668 10.49968 11.39650 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035178 B = 0.005599 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.751010 B = 5000.090807 C = 5573.923702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.551 6.551 5 N -0.609 5.609 6 C 0.111 3.889 7 C -0.130 4.130 8 C 0.167 3.833 9 H 0.019 0.981 10 C -0.124 4.124 11 H 0.079 0.921 12 C -0.136 4.136 13 C 0.177 3.823 14 N -0.595 5.595 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.126 3.874 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.252 0.748 38 H 0.067 0.933 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -6.124 -7.095 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.429 6.429 5 N -0.342 5.342 6 C -0.013 4.013 7 C -0.169 4.169 8 C 0.059 3.941 9 H 0.036 0.964 10 C -0.145 4.145 11 H 0.097 0.903 12 C -0.175 4.175 13 C 0.052 3.948 14 N -0.319 5.319 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.004 3.996 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.598 -5.618 -6.942 14.638 hybrid contribution 0.969 -0.603 0.488 1.241 sum -10.629 -6.221 -6.454 13.905 Atomic orbital electron populations 1.21524 0.93292 1.01272 1.03238 1.21676 0.98331 0.94368 1.04123 1.20780 0.81988 0.91732 0.75784 1.90658 1.54988 1.46655 1.50645 1.48367 1.05557 1.07679 1.72598 1.21806 0.91226 0.88362 0.99877 1.21885 0.96979 0.99685 0.98325 1.20632 0.87868 0.91632 0.94008 0.96376 1.22725 0.95715 0.98232 0.97797 0.90267 1.22715 0.98480 0.95776 1.00558 1.21534 0.91478 0.83237 0.98501 1.44211 1.29116 1.03469 1.55148 1.18992 1.03860 0.90030 1.22576 0.90392 1.24795 0.99256 0.96046 1.00321 1.69947 1.35678 1.09780 1.41451 0.86152 0.81704 0.79465 0.78627 1.21636 1.21714 1.20731 1.21678 0.97819 0.81767 0.98353 0.92307 0.92057 0.92137 0.88905 0.89112 0.90151 0.91701 0.91402 0.90523 0.92083 0.92361 0.92715 0.94371 0.93757 0.91445 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.16 0.34 -0.99 16 2 C -0.15 -1.48 4.75 -27.88 -0.13 -1.61 16 3 C 0.51 7.35 7.67 -10.98 -0.08 7.27 16 4 O -0.55 -9.83 15.34 5.56 0.09 -9.75 16 5 N -0.61 -8.78 2.99 -172.24 -0.52 -9.30 16 6 C 0.11 1.40 6.21 -3.49 -0.02 1.38 16 7 C -0.13 -2.13 5.48 -26.98 -0.15 -2.28 16 8 C 0.17 3.30 2.57 -67.98 -0.18 3.12 16 9 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 10 C -0.12 -2.23 2.87 -89.15 -0.26 -2.49 16 11 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 12 C -0.14 -2.55 6.54 -25.13 -0.16 -2.72 16 13 C 0.18 4.26 5.45 -1.92 -0.01 4.25 16 14 N -0.59 -14.75 3.35 -163.10 -0.55 -15.29 16 15 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 16 H 0.08 2.00 7.21 -52.49 -0.38 1.62 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.84 10.44 55.49 0.58 -26.26 16 19 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.13 1.96 5.98 -3.55 -0.02 1.94 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.09 0.83 7.55 -51.93 -0.39 0.44 16 28 H 0.09 0.74 7.99 -51.93 -0.41 0.33 16 29 H 0.08 0.79 5.84 -51.93 -0.30 0.49 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 32 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.05 1.47 7.21 -51.93 -0.37 1.09 16 36 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.07 0.99 8.06 -51.93 -0.42 0.58 16 39 H 0.09 1.44 6.99 -51.93 -0.36 1.07 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -31.33 302.52 -8.14 -39.48 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.36 Total: -1.48 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.92 Total: 1.31 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.48 Total: -50.85 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.33 -8.14 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036608317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.670 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds