Wall clock time and date at job start Sun Mar 29 2020 22:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33000 * 119.99935 * 2 1 4 4 C 1.47102 * 120.00053 * 173.03099 * 3 2 1 5 5 O 1.21617 * 119.99881 * 352.96705 * 4 3 2 6 6 N 1.34775 * 119.99773 * 172.97395 * 4 3 2 7 7 C 1.46499 * 119.99584 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47072 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47283 * 180.02562 * 8 7 6 10 10 C 1.46494 * 120.00370 * 89.99523 * 9 8 7 11 11 C 1.36934 * 119.99319 * 269.99924 * 9 8 7 12 12 H 1.08003 * 120.00531 * 22.54110 * 11 9 8 13 13 C 1.38817 * 119.99744 * 202.54290 * 11 9 8 14 14 N 1.31622 * 119.99873 * 16.79646 * 13 11 9 15 15 Si 1.86795 * 120.00157 * 196.79713 * 13 11 9 16 16 H 1.48508 * 109.47206 * 60.00243 * 15 13 11 17 17 H 1.48495 * 109.47197 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47317 * 299.99997 * 15 13 11 19 19 C 1.50699 * 120.00010 * 179.97438 * 2 1 3 20 20 C 1.52993 * 117.50082 * 0.51832 * 19 2 1 21 21 C 1.52991 * 117.50085 * 291.89119 * 19 2 1 22 22 H 1.08998 * 109.47180 * 90.00158 * 1 2 3 23 23 H 1.09000 * 109.47062 * 210.00218 * 1 2 3 24 24 H 1.08999 * 109.47550 * 330.00029 * 1 2 3 25 25 H 1.07997 * 120.00135 * 353.02776 * 3 2 1 26 26 H 0.96996 * 120.00156 * 359.97438 * 6 4 3 27 27 H 1.09002 * 109.47753 * 299.99836 * 7 6 4 28 28 H 1.09003 * 109.47383 * 59.99839 * 7 6 4 29 29 H 1.09002 * 109.46674 * 299.99882 * 8 7 6 30 30 H 1.08995 * 109.47417 * 59.99940 * 8 7 6 31 31 H 1.09002 * 109.47290 * 94.03697 * 10 9 8 32 32 H 1.08998 * 109.47391 * 214.03991 * 10 9 8 33 33 H 1.09003 * 109.47174 * 334.04316 * 10 9 8 34 34 H 0.96996 * 120.00054 * 179.97438 * 14 13 11 35 35 H 1.09004 * 115.54517 * 146.22089 * 19 2 1 36 36 H 1.09002 * 117.50032 * 359.97438 * 20 19 2 37 37 H 1.09003 * 117.50180 * 145.02012 * 20 19 2 38 38 H 1.08999 * 117.50086 * 214.98175 * 21 19 2 39 39 H 1.08995 * 117.49927 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6348 1.1566 0.1546 5 8 4.2227 0.1229 0.4099 6 7 4.3236 2.3064 0.0134 7 6 5.7804 2.3111 0.1679 8 6 6.3107 3.7312 -0.0400 9 7 7.7676 3.7359 0.1139 10 6 8.6279 3.5073 -1.0496 11 6 8.3252 3.9539 1.3454 12 1 7.7505 3.7635 2.2398 13 6 9.6291 4.4197 1.4443 14 7 10.2155 4.9616 0.3979 15 14 10.5515 4.2774 3.0624 16 1 10.6509 2.8477 3.4515 17 1 11.9156 4.8432 2.9060 18 1 9.8218 5.0276 4.1158 19 6 2.2605 -1.3051 0.0006 20 6 1.4385 -2.5954 -0.0111 21 6 2.1755 -2.1693 1.2602 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6380 2.0836 -0.1135 26 1 3.8548 3.1307 -0.1905 27 1 6.0408 1.9696 1.1697 28 1 6.2263 1.6447 -0.5705 29 1 6.0504 4.0731 -1.0418 30 1 5.8648 4.3973 0.6986 31 1 8.9162 4.4654 -1.4822 32 1 9.5212 2.9649 -0.7401 33 1 8.0863 2.9217 -1.7925 34 1 11.1265 5.2874 0.4671 35 1 3.2034 -1.3037 -0.5462 36 1 0.3527 -2.5004 -0.0188 37 1 1.8405 -3.4433 -0.5657 38 1 3.0624 -2.7368 1.5419 39 1 1.5750 -1.7938 2.0886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:22 Heat of formation + Delta-G solvation = 25.056445 kcal Electronic energy + Delta-G solvation = -18130.186637 eV Core-core repulsion = 15267.825768 eV Total energy + Delta-G solvation = -2862.360870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67530 -37.74201 -35.97470 -34.04703 -33.45771 -31.31207 -28.88011 -27.46518 -25.82923 -23.94131 -22.76098 -22.35699 -20.64447 -20.52466 -18.52194 -17.04423 -16.58812 -16.05111 -15.27779 -14.88138 -14.62601 -14.38183 -13.79164 -13.50927 -13.40646 -13.12564 -12.91665 -12.44592 -12.43209 -12.26391 -11.64330 -11.38510 -11.16813 -10.89393 -10.83126 -10.80602 -10.58556 -10.44215 -10.31283 -9.96067 -9.88842 -9.34630 -8.99118 -8.55640 -8.49906 -6.78481 -5.74124 -3.19764 1.33511 3.40406 3.46017 3.47511 3.47906 3.58760 3.92308 4.46223 4.52511 4.71605 4.93103 4.99918 5.04655 5.27697 5.30877 5.38950 5.43136 5.50151 5.64832 5.66035 5.81636 5.85825 5.94355 6.05211 6.20024 6.26628 6.30591 6.50285 6.66870 6.69936 6.78993 6.96679 7.34426 7.68556 7.81094 7.89160 8.38119 8.58678 9.21788 9.85210 10.33576 11.31369 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.003737 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.446256 B = 7491.110900 C = 7790.861726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.221 4.221 4 C 0.538 3.462 5 O -0.541 6.541 6 N -0.722 5.722 7 C 0.096 3.904 8 C 0.144 3.856 9 N -0.597 5.597 10 C 0.160 3.840 11 C -0.262 4.262 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.904 5.904 15 Si 0.904 3.096 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C -0.114 4.114 20 C -0.192 4.192 21 C -0.155 4.155 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.126 0.874 26 H 0.396 0.604 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.000 1.000 34 H 0.254 0.746 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.431 -8.734 -2.617 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.242 4.242 4 C 0.326 3.674 5 O -0.420 6.420 6 N -0.372 5.372 7 C -0.030 4.030 8 C 0.015 3.985 9 N -0.319 5.319 10 C 0.015 3.985 11 C -0.391 4.391 12 H 0.086 0.914 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.734 3.266 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.209 1.209 19 C -0.131 4.131 20 C -0.229 4.229 21 C -0.192 4.192 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.144 0.856 26 H 0.229 0.771 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.150 0.850 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.755 -9.358 -2.462 21.104 hybrid contribution 0.420 0.476 0.753 0.985 sum -18.335 -8.882 -1.709 20.444 Atomic orbital electron populations 1.20992 0.91322 1.03147 1.02852 1.21763 0.95034 0.93449 0.91236 1.22449 0.93869 0.98488 1.09347 1.18533 0.87589 0.83732 0.77538 1.90749 1.71200 1.31584 1.48513 1.46009 1.09183 1.10250 1.71781 1.22359 0.77104 1.01677 1.01850 1.20840 0.86429 0.92310 0.98920 1.43774 0.98662 1.82761 1.06746 1.20811 0.92734 0.98007 0.86907 1.19146 0.97143 1.38532 0.84277 0.91381 1.24984 0.98763 0.98374 0.97313 1.70082 1.13683 1.41666 1.29433 0.86344 0.79017 0.77967 0.83295 1.20981 1.21610 1.20864 1.21403 1.00436 0.87861 1.03440 1.23138 0.98781 0.98697 1.02317 1.22779 1.02490 1.02617 0.91303 0.90439 0.90911 0.91044 0.85601 0.77092 0.91672 0.92388 0.94166 0.92979 0.95046 0.93986 0.98126 0.93642 0.85049 0.88779 0.88763 0.88523 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.52 36.00 0.34 -0.59 16 2 C -0.01 -0.14 5.80 -101.17 -0.59 -0.73 16 3 C -0.22 -2.59 9.62 -37.80 -0.36 -2.96 16 4 C 0.54 8.44 7.66 -12.67 -0.10 8.34 16 5 O -0.54 -10.33 13.37 5.26 0.07 -10.25 16 6 N -0.72 -10.90 5.55 -61.49 -0.34 -11.24 16 7 C 0.10 1.82 6.00 -4.04 -0.02 1.79 16 8 C 0.14 2.90 5.76 -4.04 -0.02 2.88 16 9 N -0.60 -15.20 2.92 -181.12 -0.53 -15.73 16 10 C 0.16 4.00 9.00 59.84 0.54 4.54 16 11 C -0.26 -7.31 9.63 -15.06 -0.15 -7.45 16 12 H 0.07 1.86 7.88 -52.48 -0.41 1.45 16 13 C 0.00 0.12 5.01 -17.43 -0.09 0.04 16 14 N -0.90 -26.64 10.92 55.49 0.61 -26.03 16 15 Si 0.90 22.15 29.59 -169.99 -5.03 17.13 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -1.39 4.28 -91.78 -0.39 -1.78 16 20 C -0.19 -1.82 9.80 -26.74 -0.26 -2.08 16 21 C -0.15 -1.74 10.23 -26.74 -0.27 -2.01 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.48 6.32 -51.93 -0.33 0.15 16 24 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 25 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.40 4.71 8.46 -40.82 -0.35 4.37 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 31 H 0.03 0.84 7.41 -51.93 -0.38 0.45 16 32 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 33 H 0.00 0.00 8.04 -51.93 -0.42 -0.41 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.13 1.97 6.34 -51.93 -0.33 1.64 16 36 H 0.09 0.73 6.28 -51.93 -0.33 0.40 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -32.16 323.46 -8.00 -40.16 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.28 Total: 1.12 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.38 Total: -0.02 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.26 Total: -53.01 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.16 -8.00 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.216 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds